MirGeneDB 2.1
MirGeneDB ID

Dre-Mir-181-P1c1

Family name MIR-181 (all species)
Seed ACAUUCA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-181a-5
Paralogues Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Dre-Mir-181-P1b2  Dre-Mir-181-P1c2  Dre-Mir-181-P2a1  Dre-Mir-181-P2a2  Dre-Mir-181-P2b2  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c1  Hsa-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c1  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)		 chr2: 45204644-45204703 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1c1)		 Mir-181-P2c1 chr2: 45202237-45202295 [-] UCSC Ensembl
Mir-181-P1c1 chr2: 45204644-45204703 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUUGUCCUCACUCUCCUGCUGGUCUCGCAGAACAUUCAACGCUGUCGGUGAGUUUUAGACAUUGAAAAACCAUCGACCGUUGACUGUGCCCUGAGGCCACGCCCCUCUUCAGCCUCAUUU
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Structure
        10          20        30        40        50        60 
GUUGUCCUCACUCUCCU-  -|       CAGA   U      CU       A  UUUAGAC 
                  GC UGGUCUCG    ACA UCAACG  GUCGGUG GU       \
                  CG ACCGGAGU    UGU AGUUGC  CAGCUAC CA       A
UUUACUCCGACUUCUCCC  C^       CCCG   C      --       -  AAAAGUU 
.       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-181-P1c1_5p
mirBase accessionMIMAT0001623
Sequence 
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Dre-Mir-181-P1c1_3p*
mirBase accessionMIMAT0048655
Sequence 
38- ACCAUCGACCGUUGACUGUGCC -60
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