Mir-181-P1c

MirGeneDB ID

Rno-Mir-181-P1c

Family name

MIR-181 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-181c

Paralogues

Rno-Mir-181-P1a Rno-Mir-181-P1b Rno-Mir-181-P2a Rno-Mir-181-P2b Rno-Mir-181-P2c

Orthologues

Aca-Mir-181-P1c Ami-Mir-181-P1c Bta-Mir-181-P1c Cfa-Mir-181-P1c Cja-Mir-181-P1c Cmi-Mir-181-P1c Cpi-Mir-181-P1c Cpo-Mir-181-P1c Dno-Mir-181-P1c Dre-Mir-181-P1c1 Dre-Mir-181-P1c2 Eca-Mir-181-P1c Ete-Mir-181-P1c Gja-Mir-181-P1c Gmo-Mir-181-P1c1 Gmo-Mir-181-P1c2 Hsa-Mir-181-P1c Laf-Mir-181-P1c Lch-Mir-181-P1c Loc-Mir-181-P1c Mal-Mir-181-P1c1 Mal-Mir-181-P1c2 Mdo-Mir-181-P1c Mml-Mir-181-P1c Mmr-Mir-181-P1c Mmu-Mir-181-P1c Mun-Mir-181-P1c Neu-Mir-181-P1c Oan-Mir-181-P1c Ocu-Mir-181-P1c Pab-Mir-181-P1c Pbv-Mir-181-P1c Sha-Mir-181-P1c Spt-Mir-181-P1c Sto-Mir-181-P1c Tni-Mir-181-P1c1 Tni-Mir-181-P1c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(rn6)

chr19: 25290233-25290293 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P1c)

Mir-181-P2c chr19: 25290062-25290123 [-] UCSC Ensembl
Mir-181-P1c chr19: 25290233-25290293 [-] UCSC Ensembl
Mir-23-P3 chr19: 25318591-25318649 [+] UCSC Ensembl
Mir-27-P3 chr19: 25318749-25318811 [+] UCSC Ensembl
Mir-24-P3 chr19: 25318887-25318944 [+] UCSC Ensembl

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

UUAUCCAAGAACUUGCCAAGGGUUUGGGGGAACAUUCAACCUGUCGGUGAGUUUGGGCAGCUCAGACAAACCAUCGACCGUUGAGUGGACCCCGAGGCCUGGAACUGCCACCCGUCUACCC

Get precursor sequence

Structure

        10          20        30        40        50        60 
UUAUCCAAGAACUUGCCAA--|     G    AA        CU       A   UGGGCAG 
                     GGGUUU GGGG  CAUUCAAC  GUCGGUG GUU       \
                     UCCGGA CCCC  GUGAGUUG  CAGCUAC CAA       C
CCCAUCUGCCCACCGUCAAGG^     G    AG        C-       -   ACAGACU 
 .       110       100        90        80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-181-P1c_5p

mirBase accession

MIMAT0000857

Sequence

0- AACAUUCAACCUGUCGGUGAGUU -23

Get sequence

Proposed targets

microrna.org: MIMAT0000857
TargetScanVert: rno-miR-181c-5p
miRDB: MIMAT0000857

Star sequence

Rno-Mir-181-P1c_3p*

mirBase accession

MIMAT0017137

Sequence

39- ACCAUCGACCGUUGAGUGGACC -61

Get sequence

Proposed targets

TargetScanVert: rno-miR-181c-3p
miRDB: MIMAT0017137