MirGeneDB 3.0
MirGeneDB ID

Rno-Mir-181-P2c

Family name MIR-181 (all species)
Species Norway rat (Rattus norvegicus)
MiRBase ID rno-mir-181d
Paralogues Rno-Mir-181-P1a  Rno-Mir-181-P1b  Rno-Mir-181-P1c  Rno-Mir-181-P2a  Rno-Mir-181-P2b 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cja-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2  Eca-Mir-181-P2c  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Gmo-Mir-181-P2c2  Hsa-Mir-181-P2c  Laf-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmr-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Neu-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pab-Mir-181-P2c  Pbv-Mir-181-P2c  Sha-Mir-181-P2c  Spt-Mir-181-P2c3  Spt-Mir-181-P2c4  Sto-Mir-181-P2c  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(rn6)		 chr19: 25290062-25290123 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2c)		 Mir-181-P2c chr19: 25290062-25290123 [-] UCSC Ensembl
Mir-181-P1c chr19: 25290233-25290293 [-] UCSC Ensembl
Mir-23-P3 chr19: 25318591-25318649 [+] UCSC Ensembl
Mir-27-P3 chr19: 25318749-25318811 [+] UCSC Ensembl
Mir-24-P3 chr19: 25318887-25318944 [+] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)		 
CUGCCUCAGGCCACAGCAAAGGUCACAAUUAACAUUCAUUGUUGUCGGUGGGUUGUGAGGAGAAGACCAGACCCACCGGGGGAUGAAUGUCACUGUGGCUGGGCCAAACAACAGUCUGAGAG
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Structure
        10        20          30        40        50        60  
CUGCCUCAGGCCACAGCAAA--|      AUUA         G UG          GUGAGGA 
                      GGUCACA    ACAUUCAUU U  UCGGUGGGUU       \
                      UCGGUGU    UGUAAGUAG G  GGCCACCCAG       G
GAGAGUCUGACAACAAACCGGG^      CAC-         G --          ACCAGAA 
120       110       100         90        80          70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
- +
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Mature sequence

Rno-Mir-181-P2c_5p
mirBase accessionMIMAT0005299
Sequence 
0- AACAUUCAUUGUUGUCGGUGGGUU -24
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Proposed targets microrna.org: MIMAT0005299
TargetScanVert: rno-miR-181d-5p
miRDB: MIMAT0005299
Star sequence

Rno-Mir-181-P2c_3p*
mirBase accessionMIMAT0017296
Sequence 
42- CCACCGGGGGAUGAAUGUCA -62
Get sequence
Proposed targets TargetScanVert: rno-miR-181d-3p
miRDB: MIMAT0017296