MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-181-P2c1-v1

Family name MIR-181 (all species)
Seed ACAUUCA
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-181-P1a1  Tni-Mir-181-P1b1  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2  Tni-Mir-181-P2a1  Tni-Mir-181-P2b1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Hsa-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Sto-Mir-181-P2c 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
15: 5125603-5125664 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGCUGCUGGCAGAGACCAAAGGUCACAGUCAACAUUCAUUGCUGUCGCUGGGUUGGACUGUGUAGAAAAGCUCACUGAACAAUGAGUGCAACUGUGGCCCAGAUCUGCCCAACUCUUGUCUC
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Structure
        10        20           30        40        50        60 
CGCUGCUGGCAGAGACCAAA---|        CAA         CUG   C     UGGACUG 
                       GGUCACAGU   CAUUCAUUG   UCG UGGGU       U
                       CCGGUGUCA   GUGAGUAAC   AGU ACUCG       G
CUCUGUUCUCAACCCGUCUAGAC^        AC-         A--   C     AAAAGAU 
120       110       100        90         80          70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
 +
Sp Sp Sp To
Mature sequence

Tni-Mir-181-P2c1-v1_5p

mirBase accessionNone
Sequence
0- AACAUUCAUUGCUGUCGCUGGGU -23
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Star sequence

Tni-Mir-181-P2c1-v1_3p*

mirBase accessionNone
Sequence
41- UCACUGAACAAUGAGUGCAAC -62
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