Mir-181-P2c

MirGeneDB ID

Sto-Mir-181-P2c

Family name

MIR-181 (all species)

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-181-P1a Sto-Mir-181-P1b Sto-Mir-181-P1c Sto-Mir-181-P2a Sto-Mir-181-P2b

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cja-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c1 Dre-Mir-181-P2c2 Eca-Mir-181-P2c Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01009266.1: 70250-70309 [+]

Clustered miRNAs
(< 50kb from Mir-181-P2c)

Mir-181-P1c BFAA01009266.1: 65677-65738 [+]
Mir-181-P2c BFAA01009266.1: 70250-70309 [+]

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

UCGGCCACCUUUUCUGUAAAGGCCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGUGAAUUAUGGAAAACUCGCUGACCAAUGAGUGGAACUGUGUCCGGAUUGAACACCUUUCACUUGG

Get precursor sequence

Structure

        10        20          30        40        50        60 
UCGGCCACCUUUUCUGUAAA--| C    AUCAA         CU           GUGAAU 
                      GG CACA     CAUUCAUUG  GUCGGUGGGUU      \
                      CC GUGU     GUGAGUAAC  CAGUCGCUCAA      U
GGUUCACUUUCCACAAGUUAGG^ U    CAAG-         --           AAGGUA 
.       110       100        90         80          70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Sto-Mir-181-P2c_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

Get sequence

Star sequence

Sto-Mir-181-P2c_3p*

mirBase accession

None

Sequence

39- CUCGCUGACCAAUGAGUGGAA -60

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