| MirGeneDB ID | Spt-Mir-181-P2c4 |
|---|---|
| Family name | MIR-181 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | Spt-Mir-181-P1a Spt-Mir-181-P1b Spt-Mir-181-P1c Spt-Mir-181-P2a Spt-Mir-181-P2b Spt-Mir-181-P2c3 |
| Orthologues | Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cja-Mir-181-P2c Cmi-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Eca-Mir-181-P2c Ete-Mir-181-P2c Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Sto-Mir-181-P2c |
| Node of Origin (locus) | S. punctatus |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01000882.1: 188702-188764 [-] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-181-P2c4) |
Mir-181-P2c4
QEPC01000882.1: 188702-188764 [-]
UCSC
Ensembl
Mir-181-P2c3 QEPC01000882.1: 191253-191315 [-] UCSC Ensembl Mir-181-P1c QEPC01000882.1: 194301-194362 [-] UCSC Ensembl |
| Seed | ACAUUCA |
| Precursor (pre-Mir +30nt flank) |
GGUCCCUCCCAUCCUGUCAAAGUCACAGUCAACAUUCAUUGCUGUCGGUGGGUUGUGAUGCUGAAAGAGAAACUCGCUGAUCAGUGGAUGUAACUGCGGCGGCGAUGUAGCCGGCGGGGGGCGGet precursor sequence |
| Structure | 10 20 30 40 50 60 GGUCCCUCCCAUCCUGUCAAA--| A CA CU GUGAUGC GUC CAGU ACAUUCAUUG GUCGGUGGGUU U CGG GUCA UGUAGGUGAC UAGUCGCUCAA G GCGGGGGGCGGCCGAUGUAGCGG^ C A- -- AGAGAAA 120 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UGUG in loop |
| Mature sequence | Spt-Mir-181-P2c4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AACAUUCAUUGCUGUCGGUGGGUU -24
Get sequence
|
| Star sequence | Spt-Mir-181-P2c4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
42- CUCGCUGAUCAGUGGAUGUAA -63
Get sequence
|
