Mir-181-P2c

MirGeneDB ID

Cmi-Mir-181-P2c

Family name

MIR-181 (all species)

Species

Australian ghostshark (Callorhinchus milii)

MiRBase ID

Paralogues

Cmi-Mir-181-P1a Cmi-Mir-181-P1b Cmi-Mir-181-P1c Cmi-Mir-181-P2a Cmi-Mir-181-P2b

Orthologues

Aca-Mir-181-P2c Ami-Mir-181-P2c Bta-Mir-181-P2c Cfa-Mir-181-P2c Cja-Mir-181-P2c Cpi-Mir-181-P2c Dno-Mir-181-P2c Dre-Mir-181-P2c1 Dre-Mir-181-P2c2 Eca-Mir-181-P2c Ete-Mir-181-P2c Gmo-Mir-181-P2c1 Gmo-Mir-181-P2c2 Hsa-Mir-181-P2c Laf-Mir-181-P2c Lch-Mir-181-P2c Loc-Mir-181-P2c Mal-Mir-181-P2c1 Mal-Mir-181-P2c2 Mdo-Mir-181-P2c Mml-Mir-181-P2c Mmr-Mir-181-P2c Mmu-Mir-181-P2c Mun-Mir-181-P2c Neu-Mir-181-P2c Oan-Mir-181-P2c Ocu-Mir-181-P2c Pab-Mir-181-P2c Pbv-Mir-181-P2c Rno-Mir-181-P2c Sha-Mir-181-P2c Spt-Mir-181-P2c3 Spt-Mir-181-P2c4 Sto-Mir-181-P2c Tni-Mir-181-P2c1-v1 Tni-Mir-181-P2c2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)

KI636034.1: 193682-193742 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-181-P2c)

Mir-181-P1c KI636034.1: 193153-193212 [+] UCSC Ensembl
Mir-181-P2c KI636034.1: 193682-193742 [+] UCSC Ensembl

Seed

ACAUUCA

Precursor
(pre-Mir +30nt flank)

UGCCUGCAGUUAUCAGUGAAAGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGUGAAUUGUUAGAAAACUCGCUGACCAAUGAAUGGAACUGUGGCUGGAUCACACAGCUUUCGCUCAA

Get precursor sequence

Structure

        10        20          30        40        50        60 
UGCCUGCAGUUAUCAGUGAA--|      AUCAA         CU           GUGAAU 
                      AGUCACA     CAUUCAUUG  GUCGGUGGGUU      U
                      UCGGUGU     GUAAGUAAC  CAGUCGCUCAA      G
AACUCGCUUUCGACACACUAGG^      CAAG-         --           AAGAUU 
 .       110       100        90         80          70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Bl	Br	Ey	Gi	He	In	Ki	Li	Mu	Ov	Pa	Re	Sk	Sp	Te	Ut

Mature sequence

Cmi-Mir-181-P2c_5p

mirBase accession

None

Sequence

0- AACAUUCAUUGCUGUCGGUGGGUU -24

Get sequence

Star sequence

Cmi-Mir-181-P2c_3p*

mirBase accession

None

Sequence

40- CUCGCUGACCAAUGAAUGGAA -61

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