MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-181-P2c2

Family name MIR-181 (all species)
Seed ACAUUCA
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-181c
Paralogues Dre-Mir-181-P1a1  Dre-Mir-181-P1a2  Dre-Mir-181-P1b2  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Dre-Mir-181-P2a1  Dre-Mir-181-P2a2  Dre-Mir-181-P2b2  Dre-Mir-181-P2c1 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cmi-Mir-181-P2c  Cpi-Mir-181-P2c  Dno-Mir-181-P2c  Ete-Mir-181-P2c  Gmo-Mir-181-P2c2  Hsa-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c2  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Sto-Mir-181-P2c  Tni-Mir-181-P2c2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr3: 34197705-34197762 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2c2)
Mir-181-P1c2 chr3: 34197460-34197519 [+] UCSC Ensembl
Mir-181-P2c2 chr3: 34197705-34197762 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CAUCUACUGUCACAGCUCUGGGUCCUGAUUCACAUUCAUUGCUGUCGGUGGGUUUUAUCUCUUCGACUCGCCGGACAAUGAAUGAGAACUACGGCUCCUCCUGCGCUAAUGUGAAACG
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Structure
        10          20        30        40        50         
CAUCUACUGUCACAGCUCU--|    C  A   A         CUG          UUAU 
                     GGGUC UG UUC CAUUCAUUG   UCGGUGGGUU    C
                     CUCGG AU AAG GUAAGUAAC   GGCCGCUCAG    U
GCAAAGUGUAAUCGCGUCCUC^    C  C   A         A--          CUUC 
      110       100        90        80          70        60
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-181-P2c2_5p

mirBase accessionMIMAT0001852
Sequence
0- CACAUUCAUUGCUGUCGGUGGGUU -24
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Proposed targets TargetScanFish: dre-miR-181c
Star sequence

Dre-Mir-181-P2c2_3p*

mirBase accessionMIMAT0031980
Sequence
36- CUCGCCGGACAAUGAAUGAGAA -58
Get sequence