MirGeneDB 2.1
MirGeneDB ID

Cpi-Mir-181-P2c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-181b-3
Paralogues Cpi-Mir-181-P1a  Cpi-Mir-181-P1b  Cpi-Mir-181-P1c  Cpi-Mir-181-P2a  Cpi-Mir-181-P2b 
Orthologues Aca-Mir-181-P2c  Ami-Mir-181-P2c  Bta-Mir-181-P2c  Cfa-Mir-181-P2c  Cmi-Mir-181-P2c  Dno-Mir-181-P2c  Dre-Mir-181-P2c1  Dre-Mir-181-P2c2  Ete-Mir-181-P2c  Gmo-Mir-181-P2c1  Gmo-Mir-181-P2c2  Hsa-Mir-181-P2c  Lch-Mir-181-P2c  Loc-Mir-181-P2c  Mal-Mir-181-P2c1  Mal-Mir-181-P2c2  Mdo-Mir-181-P2c  Mml-Mir-181-P2c  Mmu-Mir-181-P2c  Mun-Mir-181-P2c  Oan-Mir-181-P2c  Ocu-Mir-181-P2c  Pbv-Mir-181-P2c  Rno-Mir-181-P2c  Sha-Mir-181-P2c  Spt-Mir-181-P2c3  Spt-Mir-181-P2c4  Sto-Mir-181-P2c  Tni-Mir-181-P2c1-v1  Tni-Mir-181-P2c1-v2  Tni-Mir-181-P2c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584948: 1001354-1001416 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P2c)		 Mir-181-P1c JH584948: 1000000-1000061 [+] UCSC Ensembl
Mir-181-P2c JH584948: 1001354-1001416 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAUUCUUACAAGCCCGAAAAGUCACAAUCAACAUUCAUUGCUGUCGGUGGGUUGUGUUGUUGAAGGAAAAACUCACUGAUCAAUGAAUGCAACUGUGAUUGGAAUGGACACAUCACAUGGGA
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Structure
        10        20          30        40        50        60  
AGAUUCUUACAAGCCCGAAA--|      AUCAA         CU           GUGUUGU 
                      AGUCACA     CAUUCAUUG  GUCGGUGGGUU       U
                      UUAGUGU     GUAAGUAAC  UAGUCACUCAA       G
AGGGUACACUACACAGGUAAGG^      CAAC-         --           AAAGGAA 
 120       110       100         90          80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Te Te Te To
Mature sequence

Cpi-Mir-181-P2c_5p
mirBase accessionMIMAT0037795
Sequence 
0- AACAUUCAUUGCUGUCGGUGGGUU -24
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Star sequence

Cpi-Mir-181-P2c_3p*
mirBase accessionMIMAT0037797
Sequence 
42- CUCACUGAUCAAUGAAUGCAA -63
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