MirGeneDB 2.1

MirGeneDB ID

Cpi-Mir-181-P1c

Family name MIR-181 (all species)
Seed ACAUUCA
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-181a-3
Paralogues Cpi-Mir-181-P1a  Cpi-Mir-181-P1b  Cpi-Mir-181-P2a  Cpi-Mir-181-P2b  Cpi-Mir-181-P2c 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cmi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Hsa-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH584948: 1000000-1000061 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1c)
Mir-181-P1c JH584948: 1000000-1000061 [+] UCSC Ensembl
Mir-181-P2c JH584948: 1001354-1001416 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUAAACUACAAAGAUGCAAAGGUUUCAGUGAACAUUCAACGCUGUCGGUGAGUUUUCUCAAUAAGGUUAAACCAUCGACCGUUGAGUGUACCCUGCGGCCGGAUUAGCAGCAGCUGAAUUGA
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Structure
        10        20          30        40        50        60  
CUAAACUACAAAGAUGCAAA--|  UU   UGA          CU       A  UUUCUCAA 
                      GGU  CAG   ACAUUCAACG  GUCGGUG GU        \
                      CCG  GUC   UGUGAGUUGC  CAGCUAC CA        U
AGUUAAGUCGACGACGAUUAGG^  GC   CCA          --       -  AAUUGGAA 
120       110       100        90        80           70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Te Te Te To
Mature sequence

Cpi-Mir-181-P1c_5p

mirBase accessionMIMAT0037791
Sequence
0- AACAUUCAACGCUGUCGGUGAGU -23
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Star sequence

Cpi-Mir-181-P1c_3p*

mirBase accessionMIMAT0037794
Sequence
40- ACCAUCGACCGUUGAGUGUACC -62
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