MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-181-P1c

Family name MIR-181 (all species)
Species Horse (Equus caballus)
MiRBase ID
Paralogues Eca-Mir-181-P1a  Eca-Mir-181-P1b  Eca-Mir-181-P2a  Eca-Mir-181-P2b  Eca-Mir-181-P2c 
Orthologues Aca-Mir-181-P1c  Ami-Mir-181-P1c  Bta-Mir-181-P1c  Cfa-Mir-181-P1c  Cja-Mir-181-P1c  Cmi-Mir-181-P1c  Cpi-Mir-181-P1c  Cpo-Mir-181-P1c  Dno-Mir-181-P1c  Dre-Mir-181-P1c1  Dre-Mir-181-P1c2  Ete-Mir-181-P1c  Gja-Mir-181-P1c  Gmo-Mir-181-P1c1  Gmo-Mir-181-P1c2  Hsa-Mir-181-P1c  Laf-Mir-181-P1c  Lch-Mir-181-P1c  Loc-Mir-181-P1c  Mal-Mir-181-P1c1  Mal-Mir-181-P1c2  Mdo-Mir-181-P1c  Mml-Mir-181-P1c  Mmr-Mir-181-P1c  Mmu-Mir-181-P1c  Mun-Mir-181-P1c  Neu-Mir-181-P1c  Oan-Mir-181-P1c  Ocu-Mir-181-P1c  Pab-Mir-181-P1c  Pbv-Mir-181-P1c  Rno-Mir-181-P1c  Sha-Mir-181-P1c  Spt-Mir-181-P1c  Sto-Mir-181-P1c  Tni-Mir-181-P1c1  Tni-Mir-181-P1c2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009154.1: 46208596-46208656 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-181-P1c)		 Mir-181-P2c CM009154.1: 46208382-46208444 [-] UCSC Ensembl
Mir-181-P1c CM009154.1: 46208596-46208656 [-] UCSC Ensembl
Mir-23-P3 CM009154.1: 46233017-46233075 [+] UCSC Ensembl
Mir-27-P3 CM009154.1: 46233215-46233276 [+] UCSC Ensembl
Mir-24-P3 CM009154.1: 46233360-46233419 [+] UCSC Ensembl
Seed ACAUUCA
Precursor
(pre-Mir +30nt flank)		 
UCCCCCAGAAAGUCGCCAAGGGUUUGGGGGAACAUUCAACCUGUCGGUGAGUUUGGACAGCUCAGGCAAACCAUCGACCGUUGAGUGGACCUCGAGGCCUGGAACUGCCGUCCACCCAGCG
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Structure
        10          20        30        40        50        60 
UCCCCCAGAAAGUCGCCAA--|     G    AA        CU       A   UGGACAG 
                     GGGUUU GGGG  CAUUCAAC  GUCGGUG GUU       \
                     UCCGGA CUCC  GUGAGUUG  CAGCUAC CAA       C
GCGACCCACCUGCCGUCAAGG^     G    AG        C-       -   ACGGACU 
 .       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Mature sequence

Eca-Mir-181-P1c_5p
mirBase accessionNone
Sequence 
0- AACAUUCAACCUGUCGGUGAGUU -23
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Star sequence

Eca-Mir-181-P1c_3p*
mirBase accessionNone
Sequence 
39- ACCAUCGACCGUUGAGUGGACC -61
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