MirGeneDB 3.0
MirGeneDB ID

Eca-Mir-24-P3

Family name MIR-24 (all species)
Species Horse (Equus caballus)
MiRBase ID eca-mir-24-1
Paralogues Eca-Mir-24-P2 
Orthologues Aca-Mir-24-P3  Ami-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cja-Mir-24-P3  Cmi-Mir-24-P3  Cpi-Mir-24-P3  Cpo-Mir-24-P3  Dno-Mir-24-P3  Dre-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Gmo-Mir-24-P3  Hsa-Mir-24-P3  Laf-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmr-Mir-24-P3  Mmu-Mir-24-P3  Mun-Mir-24-P3a  Mun-Mir-24-P3b  Neu-Mir-24-P3  Oan-Mir-24-P3  Ocu-Mir-24-P3  Pab-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Sto-Mir-24-P3  Tgu-Mir-24-P3  Tni-Mir-24-P3  Xla-Mir-24-P3c  Xla-Mir-24-P3d  Xtr-Mir-24-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_002863925.1_EquCab3.0)		 CM009154.1: 46233360-46233419 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P3)		 Mir-181-P2c CM009154.1: 46208382-46208444 [-] UCSC Ensembl
Mir-181-P1c CM009154.1: 46208596-46208656 [-] UCSC Ensembl
Mir-23-P3 CM009154.1: 46233017-46233075 [+] UCSC Ensembl
Mir-27-P3 CM009154.1: 46233215-46233276 [+] UCSC Ensembl
Mir-24-P3 CM009154.1: 46233360-46233419 [+] UCSC Ensembl
Seed GGCUCAG
Precursor
(pre-Mir +30nt flank)		 
UGCCCCGUGCCUCCCCGGGCUCUGCCUCCCGUGCCUACUGAGCUGAAACACAGUUGGUUUGUGCAGACUGGCUCAGUUCAGCAGGAACAGGAGUCAAGCCCCCUUGGAGCCUGCAGCCCC
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Structure
        10           20        30        40        50        60
UGCCCCGUGCCUCCCCG---|   C  C    C  G   A         AACA    UGGUU 
                    GGCU UG CUCC GU CCU CUGAGCUGA    CAGU     U
                    CCGA AC GAGG CA GGA GACUUGACU    GUCA     G
CCCCGACGUCCGAGGUUCCC^   -  U    A  A   C         CG--    GACGU 
.       110       100         90        80          70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
Ps Bo Ca Em En En En En En En En Gl He He Ho Im Ki Li Lo Lu Ma Ma Mi Pl Sp Te Tr Ut Ut Yo
Star sequence

Eca-Mir-24-P3_5p*
mirBase accessionNone
Sequence 
0- GUGCCUACUGAGCUGAAACACAGU -24
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Mature sequence

Eca-Mir-24-P3_3p
mirBase accessionMIMAT0012987
Sequence 
38- UGGCUCAGUUCAGCAGGAACAG -60
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