MirGeneDB 2.1
MirGeneDB ID

Cpi-Mir-24-P3

Family name MIR-24 (all species)
Seed GGCUCAG
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-24-2
Paralogues Cpi-Mir-24-P2 
Orthologues Aca-Mir-24-P3  Ami-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cmi-Mir-24-P3  Cpo-Mir-24-P3  Dno-Mir-24-P3  Dre-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Gmo-Mir-24-P3  Hsa-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmu-Mir-24-P3  Mun-Mir-24-P3a  Mun-Mir-24-P3b  Oan-Mir-24-P3  Ocu-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Sto-Mir-24-P3  Tgu-Mir-24-P3  Tni-Mir-24-P3  Xla-Mir-24-P3c  Xla-Mir-24-P3d  Xtr-Mir-24-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)		 JH584948: 868114-868173 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P3)		 Mir-24-P3 JH584948: 868114-868173 [-] UCSC Ensembl
Mir-27-P3 JH584948: 868327-868390 [-] UCSC Ensembl
Mir-23-P3 JH584948: 868693-868754 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCCCUGCCGCGCUCCCGGGCUCUGCCUCCCGUGCCUACUGAGCUGAUACUCAGUCGCUUUGCUUAAACUGGCUCAGUUCAGCAGGAACAGGAGUCGGGCUCCAGCCUCGCGCCGGCCAGA
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Structure
        10           20        30        40        50        60
GCCCUGCCGCGCUCCCG---|  U   C    C  G   A         UAC     CGCUU 
                    GGC CUG CUCC GU CCU CUGAGCUGA   UCAGU     U
                    UCG GGC GAGG CA GGA GACUUGACU   GGUCA     G
AGACCGGCCGCGCUCCGACC^  -   U    A  A   C         C--     AAUUC 
.       110       100         90        80          70
Deep sequencing
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CommentMost other vertebrates are clearly Group 2 but this taxon does not seem to express the untemplated 3'U at significantly high levels.
3' NTU No
MotifsNo
Tissue expression
-   +
Te Te Te To
Star sequence

Cpi-Mir-24-P3_5p*
mirBase accessionMIMAT0037659
Sequence 
0- GUGCCUACUGAGCUGAUACUCAGU -24
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Mature sequence

Cpi-Mir-24-P3_3p
mirBase accessionMIMAT0037658
Sequence 
38- UGGCUCAGUUCAGCAGGAACAG -60
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