MirGeneDB

MirGeneDB ID

Cpi-Mir-24-P2

Family name MIR-24 (all species)
Seed GGCUCAG
Species Western painted turtle (Chrysemys picta bellii)
MiRBase ID cpi-mir-24-1
Paralogues Cpi-Mir-24-P1 
Orthologues Aca-Mir-24-P2  Ami-Mir-24-P2  Bta-Mir-24-P2  Cfa-Mir-24-P2  Cpo-Mir-24-P2  Dno-Mir-24-P2  Dre-Mir-24-P2a  Dre-Mir-24-P2b  Ete-Mir-24-P2  Gga-Mir-24-P2  Hsa-Mir-24-P2  Mdo-Mir-24-P2  Mml-Mir-24-P2  Mmu-Mir-24-P2  Oan-Mir-24-P2  Ocu-Mir-24-P2  Rno-Mir-24-P2  Sha-Mir-24-P2  Sto-Mir-24-o2  Sto-Mir-24-P2  Tgu-Mir-24-P2  Xtr-Mir-24-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(chrPic1)
JH584764: 1108440-1108499 [-] UCSC
Clustered MiRNAs
(< 10kb from Mir-24-P2)
Mir-24-P2 JH584764: 1108440-1108499 [-] UCSC
Mir-27-P2 JH584764: 1108949-1109011 [-] UCSC
Mir-23-P2 JH584764: 1109160-1109219 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GUUCCAGAUUGUUGAUGGACCCGUCCUCCGGUGCCUACUGAGCUGAUAUCAGUUCUGAUUUUACAUACUGGCUCAGUUCAGCAGGAACAGGAGUCGAGCCCUAAAGCAAAAAGAUGUGCC
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Structure
        10        20           30        40        50          
GUUCCAGAUUGUUGAUGGACC---| UC    G  G   A         UA     UCUGAU 
                        CG  CUCC GU CCU CUGAGCUGA  UCAGU      \
                        GC  GAGG CA GGA GACUUGACU  GGUCA      U
CCGUGUAGAAAAACGAAAUCCCGA^ U-    A  A   C         C-     UACAUU 
.       110       100         90        80         70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
 +
Te Te Te To
Star sequence

Cpi-Mir-24-P2_5p*

MirBase accessionMIMAT0037657
Sequence
0- GUGCCUACUGAGCUGAUAUCAGU -23
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Mature sequence

Cpi-Mir-24-P2_3p

MirBase accessionMIMAT0037658
Sequence
38- UGGCUCAGUUCAGCAGGAACAG -60
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