MirGeneDB

MirGeneDB ID

Sha-Mir-24-P2

Family name MIR-24 (all species)
Seed GGCUCAG
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-24-1
Paralogues Sha-Mir-24-P1 
Orthologues Aca-Mir-24-P2  Ami-Mir-24-P2  Bta-Mir-24-P2  Cfa-Mir-24-P2  Cpi-Mir-24-P2  Cpo-Mir-24-P2  Dno-Mir-24-P2  Dre-Mir-24-P2a  Dre-Mir-24-P2b  Ete-Mir-24-P2  Gga-Mir-24-P2  Hsa-Mir-24-P2  Mdo-Mir-24-P2  Mml-Mir-24-P2  Mmu-Mir-24-P2  Oan-Mir-24-P2  Ocu-Mir-24-P2  Rno-Mir-24-P2  Sto-Mir-24-o2  Sto-Mir-24-P2  Tgu-Mir-24-P2  Xtr-Mir-24-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(DEVIL7_traces)
GL841474.1: 1160665-1160724 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-24-P2)
Mir-23-P2 GL841474.1: 1159875-1159934 [+] UCSC Ensembl
Mir-27-P2 GL841474.1: 1160088-1160150 [+] UCSC Ensembl
Mir-24-P2 GL841474.1: 1160665-1160724 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCUGAGCUGUGGAUUGGACCCGCCCUCCGGUGCCUACUGAGCUGAUAACAGUUCUGAUUUUACACACUGGCUCAGUUCAGCAGGAACAGGAGUCGAGCCCGAGAGCAAAAAAGACUACG
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Structure
        10        20           30        40        50          
UUCUGAGCUGUGGAUUGGACC---| CC    G  G   A         UAA    UCUGAU 
                        CG  CUCC GU CCU CUGAGCUGA   CAGU      \
                        GC  GAGG CA GGA GACUUGACU   GUCA      U
GCAUCAGAAAAAACGAGAGCCCGA^ U-    A  A   C         CG-    CACAUU 
.       110       100         90        80         70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
 +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-24-P2_5p*

MirBase accessionNone
Sequence
0- GUGCCUACUGAGCUGAUAACAGU -23
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Mature sequence

Sha-Mir-24-P2_3p

MirBase accessionMIMAT0022787
Sequence
38- UGGCUCAGUUCAGCAGGAACAG -60
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