MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-24-P2

Family name MIR-24 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-24-P3 
Orthologues Aca-Mir-24-P2  Ami-Mir-24-P2  Bta-Mir-24-P2  Cfa-Mir-24-P2  Cja-Mir-24-P2  Cpi-Mir-24-P2  Cpo-Mir-24-P2  Dno-Mir-24-P2  Dre-Mir-24-P2a  Dre-Mir-24-P2b  Eca-Mir-24-P2  Ete-Mir-24-P2  Gga-Mir-24-P2  Gmo-Mir-24-P2b  Hsa-Mir-24-P2  Laf-Mir-24-P2  Lch-Mir-24-P2  Loc-Mir-24-P2  Mdo-Mir-24-P2  Mml-Mir-24-P2  Mmr-Mir-24-P2  Mmu-Mir-24-P2  Mun-Mir-24-P2  Neu-Mir-24-P2  Oan-Mir-24-P2  Ocu-Mir-24-P2  Pab-Mir-24-P2  Pbv-Mir-24-P2  Rno-Mir-24-P2  Sha-Mir-24-P2  Spt-Mir-24-P2  Sto-Mir-24-P2  Tgu-Mir-24-P2  Tni-Mir-24-P2b  Xla-Mir-24-P2c  Xla-Mir-24-P2d  Xtr-Mir-24-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635929.1: 200598-200657 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P2)		 Mir-23-P2 KI635929.1: 195324-195383 [+] UCSC Ensembl
Mir-27-P2 KI635929.1: 195561-195624 [+] UCSC Ensembl
Mir-24-P2 KI635929.1: 200598-200657 [+] UCSC Ensembl
Seed GGCUCAG
Precursor
(pre-Mir +30nt flank)		 
GGUUGAAGUUUGGAUUGGACCUGAUCUCUUGUGCCUACUGAGCUGAUAACAGUUACUAUCUUACAUACUGGCUCAGUUCAGCAGGAACAGGAGUUGGGCCCCUACACAAAAUACACUACA
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Structure
        10           20        30        40        50          
GGUUGAAGUUUGGAUUGGA---| UG U       G   A         UAA    UACUAU 
                      CC  A CUCUUGU CCU CUGAGCUGA   CAGU      \
                      GG  U GAGGACA GGA GACUUGACU   GUCA      C
ACAUCACAUAAAACACAUCCCC^ GU -       A   C         CG-    UACAUU 
.       110       100         90        80         70
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU Yes
MotifsNo
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-24-P2_5p*
mirBase accessionNone
Sequence 
0- GUGCCUACUGAGCUGAUAACAGU -23
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Mature sequence

Cmi-Mir-24-P2_3p
mirBase accessionNone
Sequence 
38- UGGCUCAGUUCAGCAGGAACAG -60
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