MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-23-P2

Family name MIR-23 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-23-P3a  Cmi-Mir-23-P3b  Cmi-Mir-23-P4 
Orthologues Aca-Mir-23-P2  Ami-Mir-23-P2  Bta-Mir-23-P2  Cfa-Mir-23-P2  Cja-Mir-23-P2  Cli-Mir-23-P2  Cpi-Mir-23-P2  Cpo-Mir-23-P2  Dno-Mir-23-P2  Dre-Mir-23-P2a  Dre-Mir-23-P2b  Eca-Mir-23-P2  Ete-Mir-23-P2  Gga-Mir-23-P2  Gja-Mir-23-P2  Gmo-Mir-23-P2b  Hsa-Mir-23-P2  Laf-Mir-23-P2  Lch-Mir-23-P2  Loc-Mir-23-P2  Mal-Mir-23-P2a  Mal-Mir-23-P2b  Mdo-Mir-23-P2  Mml-Mir-23-P2  Mmr-Mir-23-P2  Mmu-Mir-23-P2  Mun-Mir-23-P2  Neu-Mir-23-P2  Oan-Mir-23-P2  Ocu-Mir-23-P2  Pab-Mir-23-P2  Pbv-Mir-23-P2  Pma-Mir-23-o2  Rno-Mir-23-P2  Sha-Mir-23-P2  Spt-Mir-23-P2  Sto-Mir-23-P2  Tgu-Mir-23-P2  Tni-Mir-23-P2b  Xla-Mir-23-P2c  Xla-Mir-23-P2d  Xtr-Mir-23-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635929.1: 195324-195383 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P2)		 Mir-23-P2 KI635929.1: 195324-195383 [+] UCSC Ensembl
Mir-27-P2 KI635929.1: 195561-195624 [+] UCSC Ensembl
Mir-24-P2 KI635929.1: 200598-200657 [+] UCSC Ensembl
Seed UCACAUU
Precursor
(pre-Mir +30nt flank)		 
GAGCCUUCCUGCAUGCUGUUGUGACUGUGUGGGUUCCUGGCAUGCUGAUUUGUGACAUGAGAUAAAAAUCACAUUGCCAGGGAUUACCACGUAGCCACUGCCUUCUCUGCUGCUGUUAUG
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Structure
        10          20        30          40         50        
GAGCCUUCCUGCAUGCU--  U   A        --         -|  C      GUGACA 
                   GU GUG CUGUGUGG  GUUCCUGGC AUG UGAUUU      U
                   CG CAC GAUGCACC  UAGGGACCG UAC ACUAAA      G
GUAUUGUCGUCGUCUCUUC  U   C        AU         U^  -      AAUAGA 
.       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-23-P2_5p*
mirBase accessionNone
Sequence 
0- GGGUUCCUGGCAUGCUGAUUU -21
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Mature sequence

Cmi-Mir-23-P2_3p
mirBase accessionNone
Sequence 
37- AUCACAUUGCCAGGGAUUACCAC -60
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