MirGeneDB 2.1

MirGeneDB ID

Tgu-Mir-23-P2

Family name MIR-23 (all species)
Seed UCACAUU
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-23
Paralogues Tgu-Mir-23-P3 
Orthologues Aca-Mir-23-P2  Ami-Mir-23-P2  Bta-Mir-23-P2  Cfa-Mir-23-P2  Cli-Mir-23-P2  Cmi-Mir-23-P2  Cpi-Mir-23-P2  Cpo-Mir-23-P2  Dno-Mir-23-P2  Dre-Mir-23-P2a  Dre-Mir-23-P2b  Ete-Mir-23-P2  Gga-Mir-23-P2  Gja-Mir-23-P2  Gmo-Mir-23-P2b  Hsa-Mir-23-P2  Lch-Mir-23-P2  Loc-Mir-23-P2  Mal-Mir-23-P2a  Mal-Mir-23-P2b  Mdo-Mir-23-P2  Mml-Mir-23-P2  Mmu-Mir-23-P2  Mun-Mir-23-P2  Oan-Mir-23-P2  Ocu-Mir-23-P2  Pbv-Mir-23-P2  Pma-Mir-23-o2  Rno-Mir-23-P2  Sha-Mir-23-P2  Spt-Mir-23-P2  Sto-Mir-23-P2  Tni-Mir-23-P2b  Xla-Mir-23-P2c  Xla-Mir-23-P2d  Xtr-Mir-23-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(TaeGut1_add)
Z: 10609383-10609442 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P2)
Mir-24-P2 Z: 10608541-10608600 [-] UCSC Ensembl
Mir-27-P2 Z: 10609064-10609126 [-] UCSC Ensembl
Mir-23-P2 Z: 10609383-10609442 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACAGGUUUCUUUUAAUGUUAUGGCUGUUUGGGUUCCUGGCAUGAUGAUUUGUGACUUAAGAUUAAAAUCACAUUGCCAGGGAUUACCACGCAGCCAUGACCACAGCUGCUAGCAUGAAA
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Structure
        10          20        30          40         50        
CACAGGUUUCUUUUAAU--           U   --         -|  A      GUGACU 
                   GUUAUGGCUGU UGG  GUUCCUGGC AUG UGAUUU      U
                   CAGUACCGACG ACC  UAGGGACCG UAC ACUAAA      A
AAAGUACGAUCGUCGACAC           C   AU         U^  -      AUUAGA 
.       110       100        90        80         70        60
Deep sequencing
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CommentThere is a second Drosha cut -1 on the 5p arm.
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Fe Fe Fe Fe Ma Ma Ma Ma
Star sequence

Tgu-Mir-23-P2_5p*

mirBase accessionMIMAT0014644
Sequence
0- GGGUUCCUGGCAUGAUGAUUU -21
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Mature sequence

Tgu-Mir-23-P2_3p

mirBase accessionMIMAT0014566
Sequence
37- AUCACAUUGCCAGGGAUUACCAC -60
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