| MirGeneDB ID | Lch-Mir-23-P2 |
|---|---|
| Family name | MIR-23 (all species) |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-23-P1 Lch-Mir-23-P3 Lch-Mir-23-P4 |
| Orthologues | Aca-Mir-23-P2 Ami-Mir-23-P2 Bta-Mir-23-P2 Cfa-Mir-23-P2 Cja-Mir-23-P2 Cli-Mir-23-P2 Cmi-Mir-23-P2 Cpi-Mir-23-P2 Cpo-Mir-23-P2 Dno-Mir-23-P2 Dre-Mir-23-P2a Dre-Mir-23-P2b Eca-Mir-23-P2 Ete-Mir-23-P2 Gga-Mir-23-P2 Gja-Mir-23-P2 Gmo-Mir-23-P2b Hsa-Mir-23-P2 Laf-Mir-23-P2 Loc-Mir-23-P2 Mal-Mir-23-P2a Mal-Mir-23-P2b Mdo-Mir-23-P2 Mml-Mir-23-P2 Mmr-Mir-23-P2 Mmu-Mir-23-P2 Mun-Mir-23-P2 Neu-Mir-23-P2 Oan-Mir-23-P2 Ocu-Mir-23-P2 Pab-Mir-23-P2 Pbv-Mir-23-P2 Pma-Mir-23-o2 Rno-Mir-23-P2 Sha-Mir-23-P2 Spt-Mir-23-P2 Sto-Mir-23-P2 Tgu-Mir-23-P2 Tni-Mir-23-P2b Xla-Mir-23-P2c Xla-Mir-23-P2d Xtr-Mir-23-P2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH126823.1: 177079-177138 [-] Ensembl |
| Clustered miRNAs (< 50kb from Mir-23-P2) |
Mir-24-P2
JH126823.1: 175961-176020 [-]
Ensembl
Mir-27-P2 JH126823.1: 176794-176856 [-] Ensembl Mir-23-P2 JH126823.1: 177079-177138 [-] Ensembl |
| Seed | UCACAUU |
| Precursor (pre-Mir +30nt flank) |
UGCAGGUUUCCUUUUAUGUUGUGGCUGUUUGGGUUCCUGGCAUGCUGAUUUGUGACUAAAGAUAAAAAUCACAUUGCCAGGGAUUACCACACAGCCAUACCCUUGGCCGCUGUUAUGGAAGet precursor sequence |
| Structure | 10 20 30 40 50 UGCAGGUUUCCUUUUAUGU-- U -- -| C GUGACU UGUGGCUGU UGG GUUCCUGGC AUG UGAUUU A AUACCGACA ACC UAGGGACCG UAC ACUAAA A AAGGUAUUGUCGCCGGUUCCC C AU U^ - AAUAGA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Star sequence | Lch-Mir-23-P2_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGGUUCCUGGCAUGCUGAUUU -21
Get sequence
|
| Mature sequence | Lch-Mir-23-P2_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- AUCACAUUGCCAGGGAUUACCAC -60
Get sequence
|
