Mir-23-P2

MirGeneDB ID

Loc-Mir-23-P2

Family name

MIR-23 (all species)

Species

Spotted gar (Lepisosteus oculatus)

MiRBase ID

Paralogues

Loc-Mir-23-P1 Loc-Mir-23-P4

Orthologues

Aca-Mir-23-P2 Ami-Mir-23-P2 Bta-Mir-23-P2 Cfa-Mir-23-P2 Cja-Mir-23-P2 Cli-Mir-23-P2 Cmi-Mir-23-P2 Cpi-Mir-23-P2 Cpo-Mir-23-P2 Dno-Mir-23-P2 Dre-Mir-23-P2a Dre-Mir-23-P2b Eca-Mir-23-P2 Ete-Mir-23-P2 Gga-Mir-23-P2 Gja-Mir-23-P2 Gmo-Mir-23-P2b Hsa-Mir-23-P2 Laf-Mir-23-P2 Lch-Mir-23-P2 Mal-Mir-23-P2a Mal-Mir-23-P2b Mdo-Mir-23-P2 Mml-Mir-23-P2 Mmr-Mir-23-P2 Mmu-Mir-23-P2 Mun-Mir-23-P2 Neu-Mir-23-P2 Oan-Mir-23-P2 Ocu-Mir-23-P2 Pab-Mir-23-P2 Pbv-Mir-23-P2 Pma-Mir-23-o2 Rno-Mir-23-P2 Sha-Mir-23-P2 Spt-Mir-23-P2 Sto-Mir-23-P2 Tgu-Mir-23-P2 Tni-Mir-23-P2b Xla-Mir-23-P2c Xla-Mir-23-P2d Xtr-Mir-23-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(LepOcu1)

LG2: 32741925-32741983 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P2)

Mir-24-P2 LG2: 32737407-32737466 [-] Ensembl
Mir-27-P2 LG2: 32741690-32741752 [-] Ensembl
Mir-23-P2 LG2: 32741925-32741983 [-] Ensembl

Seed

UCACAUU

Precursor
(pre-Mir +30nt flank)

UGCAGGUUUCCUUUCAUGUUGUGGCUGUGUGGGUUCCUGGCAUGCUGAUUUGUGACUUAAGAUAAAAUCACAUUGCCAGGGAUUACCACACAGCCACGGCCUUGGCGGCUGUUAUGGAA

Get precursor sequence

Structure

        10          20        30          40         50        
UGCAGGUUUCCUUUCAU--               --         -|  C      GUGACU 
                   GUUGUGGCUGUGUGG  GUUCCUGGC AUG UGAUUU      \
                   CGGCACCGACACACC  UAGGGACCG UAC ACUAAA      U
AAGGUAUUGUCGGCGGUUC               AU         U^  -      AUAGAA 
       110       100        90        80         70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

Br	Br	He	He	He	He	Ov	Ov	Ov	Ov	Te	Te	Te	Te	To

Star sequence

Loc-Mir-23-P2_5p*

mirBase accession

None

Sequence

0- GGGUUCCUGGCAUGCUGAUUU -21

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Mature sequence

Loc-Mir-23-P2_3p

mirBase accession

None

Sequence

36- AUCACAUUGCCAGGGAUUACCAC -59

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