| MirGeneDB ID | Spt-Mir-23-P2 |
|---|---|
| Family name | MIR-23 (all species) |
| Species | Tuatara (Sphenodon punctatus) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-23-P2 Ami-Mir-23-P2 Bta-Mir-23-P2 Cfa-Mir-23-P2 Cja-Mir-23-P2 Cli-Mir-23-P2 Cmi-Mir-23-P2 Cpi-Mir-23-P2 Cpo-Mir-23-P2 Dno-Mir-23-P2 Dre-Mir-23-P2a Dre-Mir-23-P2b Eca-Mir-23-P2 Ete-Mir-23-P2 Gga-Mir-23-P2 Gja-Mir-23-P2 Gmo-Mir-23-P2b Hsa-Mir-23-P2 Laf-Mir-23-P2 Lch-Mir-23-P2 Loc-Mir-23-P2 Mal-Mir-23-P2a Mal-Mir-23-P2b Mdo-Mir-23-P2 Mml-Mir-23-P2 Mmr-Mir-23-P2 Mmu-Mir-23-P2 Mun-Mir-23-P2 Neu-Mir-23-P2 Oan-Mir-23-P2 Ocu-Mir-23-P2 Pab-Mir-23-P2 Pbv-Mir-23-P2 Pma-Mir-23-o2 Rno-Mir-23-P2 Sha-Mir-23-P2 Sto-Mir-23-P2 Tgu-Mir-23-P2 Tni-Mir-23-P2b Xla-Mir-23-P2c Xla-Mir-23-P2d Xtr-Mir-23-P2 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (GCA_003113815.1_ASM311381v1_TUATARA) |
QEPC01008874.1: 6802779-6802838 [+] UCSC Ensembl |
| Clustered miRNAs (< 50kb from Mir-23-P2) |
Mir-23-P2
QEPC01008874.1: 6802779-6802838 [+]
UCSC
Ensembl
Mir-27-P2 QEPC01008874.1: 6803025-6803087 [+] UCSC Ensembl Mir-24-P2 QEPC01008874.1: 6803606-6803665 [+] UCSC Ensembl |
| Seed | UCACAUU |
| Precursor (pre-Mir +30nt flank) |
UGUAGGUUUCCUUUAAUGUUGUGGCUAUUUGGGUUCCUGGCAUGCUGAUUUGUGACUUAAGAUUAAAAUCACAUUGCCAGGGAUUACCACCUAACCAUGACCUUGGCAGCUGUUAUGGAAGet precursor sequence |
| Structure | 10 20 30 40 50 UGUAGGUUUCCUUUAAU-- UG C UU -- -| C GUGACU GU UGG UA UGG GUUCCUGGC AUG UGAUUU U CA ACC AU ACC UAGGGACCG UAC ACUAAA A AAGGUAUUGUCGACGGUUC GU A CC AU U^ - AUUAGA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Star sequence | Spt-Mir-23-P2_5p* (predicted) |
| mirBase accession | None |
| Sequence |
0- GGGUUCCUGGCAUGCUGAUUU -21
Get sequence
|
| Mature sequence | Spt-Mir-23-P2_3p (predicted) |
| mirBase accession | None |
| Sequence |
37- AUCACAUUGCCAGGGAUUACCAC -60
Get sequence
|
