Mir-23-P2

MirGeneDB ID

Gja-Mir-23-P2

Family name

MIR-23 (all species)

Species

Schlegels Japanese gecko (Gekko japonicus)

MiRBase ID

Paralogues

Gja-Mir-23-P3

Orthologues

Aca-Mir-23-P2 Ami-Mir-23-P2 Bta-Mir-23-P2 Cfa-Mir-23-P2 Cja-Mir-23-P2 Cli-Mir-23-P2 Cmi-Mir-23-P2 Cpi-Mir-23-P2 Cpo-Mir-23-P2 Dno-Mir-23-P2 Dre-Mir-23-P2a Dre-Mir-23-P2b Eca-Mir-23-P2 Ete-Mir-23-P2 Gga-Mir-23-P2 Gmo-Mir-23-P2b Hsa-Mir-23-P2 Laf-Mir-23-P2 Lch-Mir-23-P2 Loc-Mir-23-P2 Mal-Mir-23-P2a Mal-Mir-23-P2b Mdo-Mir-23-P2 Mml-Mir-23-P2 Mmr-Mir-23-P2 Mmu-Mir-23-P2 Mun-Mir-23-P2 Neu-Mir-23-P2 Oan-Mir-23-P2 Ocu-Mir-23-P2 Pab-Mir-23-P2 Pbv-Mir-23-P2 Pma-Mir-23-o2 Rno-Mir-23-P2 Sha-Mir-23-P2 Spt-Mir-23-P2 Sto-Mir-23-P2 Tgu-Mir-23-P2 Tni-Mir-23-P2b Xla-Mir-23-P2c Xla-Mir-23-P2d Xtr-Mir-23-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCF_001447785.1_Gekko_japonicus)

NW_015167066.1: 326843-326902 [+]

Clustered miRNAs
(< 50kb from Mir-23-P2)

Mir-23-P2 NW_015167066.1: 326843-326902 [+]
Mir-27-P2 NW_015167066.1: 327064-327126 [+]

Seed

UCACAUU

Precursor
(pre-Mir +30nt flank)

GUCCAGAUUUCCUUCCUGUUUUGGUUGUUUGGGUUCCUGGCAUGCUGAUUUGUGACUUAAAAUUAAAAUCACAUUGCCAGGGAUUACCACACCACCAUGACAUUGGCUUCUCUGCCUGAA

Get precursor sequence

Structure

        10          20        30          40         50        
GUCCAGAUUUCCUUCCU--   U    U  U   --         -|  C      GUGACU 
                   GUU UGGU GU UGG  GUUCCUGGC AUG UGAUUU      U
                   CAG ACCA CA ACC  UAGGGACCG UAC ACUAAA      A
AAGUCCGUCUCUUCGGUUA   U    C  C   AU         U^  -      AUUAAA 
.       110       100        90        80         70        60

Deep sequencing

Go to detailed chart

3' NTU

Yes

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Star sequence

Gja-Mir-23-P2_5p*

mirBase accession

None

Sequence

0- GGGUUCCUGGCAUGCUGAUUU -21

Get sequence

Mature sequence

Gja-Mir-23-P2_3p

mirBase accession

None

Sequence

37- AUCACAUUGCCAGGGAUUACCAC -60

Get sequence