MirGeneDB 3.0
MirGeneDB ID

Gja-Mir-27-P2

Family name MIR-27 (all species)
Species Schlegels Japanese gecko (Gekko japonicus)
MiRBase ID
Paralogues Gja-Mir-27-P3 
Orthologues Aca-Mir-27-P2  Ami-Mir-27-P2  Bta-Mir-27-P2  Cfa-Mir-27-P2  Cja-Mir-27-P2  Cli-Mir-27-P2  Cmi-Mir-27-P2  Cpi-Mir-27-P2  Cpo-Mir-27-P2  Dno-Mir-27-P2  Dre-Mir-27-P2a  Dre-Mir-27-P2b  Eca-Mir-27-P2  Ete-Mir-27-P2  Gga-Mir-27-P2  Gmo-Mir-27-P2b  Hsa-Mir-27-P2  Laf-Mir-27-P2  Lch-Mir-27-P2  Loc-Mir-27-P2  Mal-Mir-27-P2a  Mal-Mir-27-P2b  Mdo-Mir-27-P2  Mml-Mir-27-P2  Mmr-Mir-27-P2  Mmu-Mir-27-P2  Mun-Mir-27-P2  Neu-Mir-27-P2  Oan-Mir-27-P2  Ocu-Mir-27-P2  Pab-Mir-27-P2  Pbv-Mir-27-P2  Pma-Mir-27-o2  Rno-Mir-27-P2  Sha-Mir-27-P2  Spt-Mir-27-P2  Sto-Mir-27-P2  Tgu-Mir-27-P2  Tni-Mir-27-P2b  Xla-Mir-27-P2c  Xla-Mir-27-P2d  Xtr-Mir-27-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_001447785.1_Gekko_japonicus)		 NW_015167066.1: 327064-327126 [+]
Clustered miRNAs
(< 50kb from Mir-27-P2)		 Mir-23-P2 NW_015167066.1: 326843-326902 [+]
Mir-27-P2 NW_015167066.1: 327064-327126 [+]
Seed UCACAGU
Precursor
(pre-Mir +30nt flank)		 
ACUCAGAUGAAGACCUCUCUAGAGAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUUUCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAAGAGAAGGUGAGAUGGAAAACUUU
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Structure
        10          20        30        40        50        60  
ACUCAGAUGAAGACCUC--|  AGAG                  AUUG       GUGAUUGA 
                   UCU    AGGUGCAGAGCUUAGCUG    GUGAACA        \
                   AGA    UCCACGUCUUGAAUCGGU    CACUUGU        U
UUUCAAAAGGUAGAGUGGA^  GAAG                  GA--       UUCUCCUU 
 120       110       100        90        80          70
Deep sequencing
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3' NTU Yes
MotifsUGUG in loop
Tissue expression
- +
To
Star sequence

Gja-Mir-27-P2_5p*
mirBase accessionNone
Sequence 
0- AGAGCUUAGCUGAUUGGUGAACA -23
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Mature sequence

Gja-Mir-27-P2_3p
mirBase accessionNone
Sequence 
42- UUCACAGUGGCUAAGUUCUGC -63
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