MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-27-P2b

Family name MIR-27 (all species)
Seed UCACAGU
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-27b
Paralogues Gmo-Mir-27-P1  Gmo-Mir-27-P3  Gmo-Mir-27-P4a  Gmo-Mir-27-P4b 
Orthologues Aca-Mir-27-P2  Ami-Mir-27-P2  Bta-Mir-27-P2  Cfa-Mir-27-P2  Cli-Mir-27-P2  Cmi-Mir-27-P2  Cpi-Mir-27-P2  Cpo-Mir-27-P2  Dno-Mir-27-P2  Dre-Mir-27-P2b  Ete-Mir-27-P2  Gga-Mir-27-P2  Gja-Mir-27-P2  Hsa-Mir-27-P2  Lch-Mir-27-P2  Loc-Mir-27-P2  Mal-Mir-27-P2b  Mdo-Mir-27-P2  Mml-Mir-27-P2  Mmu-Mir-27-P2  Mun-Mir-27-P2  Oan-Mir-27-P2  Ocu-Mir-27-P2  Pbv-Mir-27-P2  Pma-Mir-27-o2  Rno-Mir-27-P2  Sha-Mir-27-P2  Spt-Mir-27-P2  Sto-Mir-27-P2  Tgu-Mir-27-P2  Tni-Mir-27-P2b  Xtr-Mir-27-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
contig145249: 115-177 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGCUGUAACCUCUGUCUCCAGCCAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUCUCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAGGAGAGCAUGACCCUGAGCACCAG
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Structure
        10            20        30        40        50        60  
GCGCUGUAACCUCUGUC----|  AGC                   AUUG       GUGAUUGA 
                     UCC   CAGGUGCAGAGCUUAGCUG    GUGAACA        \
                     AGG   GUCCACGUCUUGAAUCGGU    CACUUGU        U
GACCACGAGUCCCAGUACGAG^  A--                   GA--       UUCUCCUC 
 120       110       100          90        80          70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Star sequence

Gmo-Mir-27-P2b_5p*

mirBase accessionMIMAT0044008
Sequence
0- AGAGCUUAGCUGAUUGGUGAACA -23
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Mature sequence

Gmo-Mir-27-P2b_3p

mirBase accessionMIMAT0044009
Sequence
42- UUCACAGUGGCUAAGUUCUGC -63
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