MirGeneDB

MirGeneDB ID

Xtr-Mir-27-P2

Family name MIR-27 (all species)
Seed UCACAGU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-27b
Paralogues Xtr-Mir-27-P1  Xtr-Mir-27-P3c  Xtr-Mir-27-P3d 
Orthologues Aca-Mir-27-P2  Ami-Mir-27-P2  Bta-Mir-27-P2  Cfa-Mir-27-P2  Cli-Mir-27-P2  Cpi-Mir-27-P2  Cpo-Mir-27-P2  Dno-Mir-27-P2  Dre-Mir-27-P2a  Dre-Mir-27-P2b  Ete-Mir-27-P2  Gga-Mir-27-P2  Hsa-Mir-27-P2  Mdo-Mir-27-P2  Mml-Mir-27-P2  Mmu-Mir-27-P2  Oan-Mir-27-P2  Ocu-Mir-27-P2  Rno-Mir-27-P2  Sha-Mir-27-P2  Sto-Mir-27-P2  Tgu-Mir-27-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(xenTro7)
KB021649: 90035317-90035379 [-] UCSC
Clustered MiRNAs
(< 10kb from Mir-27-P2)
Mir-24-P2 KB021649: 90034717-90034775 [-] UCSC
Mir-27-P2 KB021649: 90035317-90035379 [-] UCSC
Mir-23-P2 KB021649: 90035547-90035606 [-] UCSC
Precursor
(pre-Mir +30nt flank)
GCUCAGACGCUGACCUUUCUACCAAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGAUUCCCUCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAAGAGAGGGCGAGGGGAAGCAAAGG
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Structure
        10          20        30        40        50        60  
GCUCAGACGCUGACCUU--|  ACCA                  AUUG       GUGAUUGA 
                   UCU    AGGUGCAGAGCUUAGCUG    GUGAACA        \
                   AGA    UCCACGUCUUGAAUCGGU    CACUUGU        U
GGAAACGAAGGGGAGCGGG^  GAAG                  GA--       UUCUCCCU 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-27-P2_5p*

MirBase accessionNone
Sequence
0- AGAGCUUAGCUGAUUGGUGAACA -23
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Mature sequence

Xtr-Mir-27-P2_3p

MirBase accessionMIMAT0003571
Sequence
42- UUCACAGUGGCUAAGUUCUGC -63
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Validated targets TargetScanVert: xtr-miR-27b