MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-27-P2a

Family name MIR-27 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-27-P1  Mal-Mir-27-P2b  Mal-Mir-27-P3  Mal-Mir-27-P4a  Mal-Mir-27-P4b 
Orthologues Aca-Mir-27-P2  Ami-Mir-27-P2  Bta-Mir-27-P2  Cfa-Mir-27-P2  Cja-Mir-27-P2  Cli-Mir-27-P2  Cmi-Mir-27-P2  Cpi-Mir-27-P2  Cpo-Mir-27-P2  Dno-Mir-27-P2  Dre-Mir-27-P2a  Eca-Mir-27-P2  Ete-Mir-27-P2  Gga-Mir-27-P2  Gja-Mir-27-P2  Hsa-Mir-27-P2  Laf-Mir-27-P2  Lch-Mir-27-P2  Loc-Mir-27-P2  Mdo-Mir-27-P2  Mml-Mir-27-P2  Mmr-Mir-27-P2  Mmu-Mir-27-P2  Mun-Mir-27-P2  Neu-Mir-27-P2  Oan-Mir-27-P2  Ocu-Mir-27-P2  Pab-Mir-27-P2  Pbv-Mir-27-P2  Pma-Mir-27-o2  Rno-Mir-27-P2  Sha-Mir-27-P2  Spt-Mir-27-P2  Sto-Mir-27-P2  Tgu-Mir-27-P2  Xtr-Mir-27-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884846.1: 922849-922910 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P2a)		 Mir-23-P2a KV884846.1: 922549-922607 [+] UCSC Ensembl
Mir-27-P2a KV884846.1: 922849-922910 [+] UCSC Ensembl
Seed UCACAGU
Precursor
(pre-Mir +30nt flank)		 
UGUGUGAAUCUGCUGUUCCUGAUCAGGUGCAGAGCUUAGUUAGCUGCUGAACAGGGAGUCUUAGCGAUUUGUUCACAGUGGCUAAGUUCUUCACUUGUACAGAGAUAAUGGACAUGCAUGAC
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Structure
        10          20        30        40        50        60 
UGUGUGAAUCUGCUGUUC--|  AU      C            G   C     AGGGAGUC 
                    CUG  CAGGUG AGAGCUUAGUUA CUG UGAAC        U
                    GAC  GUUCAC UCUUGAAUCGGU GAC ACUUG        U
CAGUACGUACAGGUAAUAGA^  AU      U            -   -     UUUAGCGA 
120       110       100        90        80          70
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-27-P2a_5p*
mirBase accessionNone
Sequence 
0- AGAGCUUAGUUAGCUGCUGAAC -22
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Mature sequence

Mal-Mir-27-P2a_3p
mirBase accessionNone
Sequence 
41- UUCACAGUGGCUAAGUUCUUC -62
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