Mir-27-o2

MirGeneDB ID

Pma-Mir-27-o2

Family name

MIR-27 (all species)

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-27b

Paralogues

Pma-Mir-27-o1

Orthologues

Aca-Mir-27-P2 Ami-Mir-27-P2 Bta-Mir-27-P2 Cfa-Mir-27-P2 Cja-Mir-27-P2 Cli-Mir-27-P2 Cmi-Mir-27-P2 Cpi-Mir-27-P2 Cpo-Mir-27-P2 Dno-Mir-27-P2 Dre-Mir-27-P2a Dre-Mir-27-P2b Eca-Mir-27-P2 Ete-Mir-27-P2 Gga-Mir-27-P2 Gja-Mir-27-P2 Gmo-Mir-27-P2b Hsa-Mir-27-P2 Laf-Mir-27-P2 Lch-Mir-27-P2 Loc-Mir-27-P2 Mal-Mir-27-P2a Mal-Mir-27-P2b Mdo-Mir-27-P2 Mml-Mir-27-P2 Mmr-Mir-27-P2 Mmu-Mir-27-P2 Mun-Mir-27-P2 Neu-Mir-27-P2 Oan-Mir-27-P2 Ocu-Mir-27-P2 Pab-Mir-27-P2 Pbv-Mir-27-P2 Rno-Mir-27-P2 Sha-Mir-27-P2 Spt-Mir-27-P2 Sto-Mir-27-P2 Tgu-Mir-27-P2 Tni-Mir-27-P2b Xla-Mir-27-P2c Xla-Mir-27-P2d Xtr-Mir-27-P2

Node of Origin (locus)

P. marinus

Node of Origin (family)

Vertebrata

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046069.1: 793379-793439 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-27-o2)

Mir-27-o2 NC_046069.1: 793379-793439 [-] UCSC Ensembl
Mir-23-o2 NC_046069.1: 795034-795099 [-] UCSC Ensembl

Seed

UCACAGU

Precursor
(pre-Mir +30nt flank)

AAUUCGAGCGAAGGCGUCCCGGUCCGGUGAAGGGCUUAACCCACCUGUGAGCAGCGCUUUACGAUAAGUGUUCACAGUGGCUAAGUUCUGCAUCUGUCCGGGGAUUAUUACUUCUGCACCU

Get precursor sequence

Structure

        10          20        30        40        50        60 
AAUUCGAGCGAAGGCGU--|    UCC    A        AC    C        GCGCUUU 
                   CCCGG   GGUG AGGGCUUA  CCAC UGUGAGCA       \
                   GGGCC   CUAC UCUUGAAU  GGUG ACACUUGU       A
UCCACGUCUUCAUUAUUAG^    UGU    G        C-    -        GAAUAGC 
 .       110       100        90         80         70