MirGeneDB

MirGeneDB ID

Mml-Mir-27-P2

Family name MIR-27 (all species)
Seed UCACAGU
Species Rhesus monkey (Macaca mulatta)
MiRBase ID mml-mir-27b
Paralogues Mml-Mir-27-P1 
Orthologues Aca-Mir-27-P2  Ami-Mir-27-P2  Bta-Mir-27-P2  Cfa-Mir-27-P2  Cli-Mir-27-P2  Cpi-Mir-27-P2  Cpo-Mir-27-P2  Dno-Mir-27-P2  Dre-Mir-27-P2a  Dre-Mir-27-P2b  Ete-Mir-27-P2  Gga-Mir-27-P2  Hsa-Mir-27-P2  Mdo-Mir-27-P2  Mmu-Mir-27-P2  Oan-Mir-27-P2  Ocu-Mir-27-P2  Rno-Mir-27-P2  Sha-Mir-27-P2  Sto-Mir-27-P2  Tgu-Mir-27-P2  Xtr-Mir-27-P2 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(rheMac8)
chr15: 108904322-108904384 [+] UCSC Ensembl
Clustered MiRNAs
(< 10kb from Mir-27-P2)
Mir-23-P2 chr15: 108904086-108904146 [+] UCSC Ensembl
Mir-27-P2 chr15: 108904322-108904384 [+] UCSC Ensembl
Mir-24-P2 chr15: 108904881-108904940 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCCCAGCGAUGACCUCUCUAACAAGGUGCAGAGCUUAGCUGAUUGGUGAACAGUGAUUGGUUUCCGCUUUGUUCACAGUGGCUAAGUUCUGCACCUGAAGAGAAGGUGAGAUGGGGACAGUU
Get precursor sequence
Structure
        10          20        30        40        50        60  
UGCCCAGCGAUGACCUC--|  AACA                  AUUG       GUGAUUGG 
                   UCU    AGGUGCAGAGCUUAGCUG    GUGAACA        \
                   AGA    UCCACGUCUUGAAUCGGU    CACUUGU        U
UUGACAGGGGUAGAGUGGA^  GAAG                  GA--       UUCGCCUU 
 120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
Bo Br Br Br He Ki Li Lu Ly Sk Sp Te Th
Star sequence

Mml-Mir-27-P2_5p*

MirBase accessionMIMAT0026802
Sequence
0- AGAGCUUAGCUGAUUGGUGAACA -23
Get sequence
Validated targets TargetScanVert: mml-miR-27b-5p
Mature sequence

Mml-Mir-27-P2_3p

MirBase accessionMIMAT0006167
Sequence
42- UUCACAGUGGCUAAGUUCUGC -63
Get sequence
Validated targets TargetScanVert: mml-miR-27b-3p