MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-27-P4a

Family name MIR-27 (all species)
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-27-P1  Mal-Mir-27-P2a  Mal-Mir-27-P2b  Mal-Mir-27-P3  Mal-Mir-27-P4b 
Orthologues Cmi-Mir-27-P4  Dre-Mir-27-P4a  Gmo-Mir-27-P4a  Lch-Mir-27-P4  Loc-Mir-27-P4  Sto-Mir-27-P4  Tni-Mir-27-P4a  Xtr-Mir-27-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884817.1: 552481-552544 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P4a)		 Mir-24-P4a KV884817.1: 549216-549275 [-] UCSC Ensembl
Mir-27-P4a KV884817.1: 552481-552544 [-] UCSC Ensembl
Mir-23-P4a KV884817.1: 553132-553195 [-] UCSC Ensembl
Seed UCACAGU
Precursor
(pre-Mir +30nt flank)		 
AAAAGCCAGCCACCCACUUGCUAAAGGCACAGAGCUUAGCUGAUUGGUGAGCACUGAUCCCUGCUAUGUGUUGUUCACAGUGGCUAAGUUCAGUGCCUGAGGUGAAAUAGUUGAUUCGAUGGAG
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Structure
        10          20        30        40        50        60  
AAAAGCCAGCCACCCAC--|UG  AA      A           AUUG       CUGAUCCC 
                   U  CU  AGGCAC GAGCUUAGCUG    GUGAGCA        U
                   A  GG  UCCGUG CUUGAAUCGGU    CACUUGU        G
GAGGUAGCUUAGUUGAUAA^GU  AG      A           GA--       UGUGUAUC 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
- +
Fe Fe In Ma Ma
Star sequence

Mal-Mir-27-P4a_5p*
mirBase accessionNone
Sequence 
0- AGAGCUUAGCUGAUUGGUGAGCA -23
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Mature sequence

Mal-Mir-27-P4a_3p
mirBase accessionNone
Sequence 
43- UUCACAGUGGCUAAGUUCAGU -64
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