MirGeneDB 2.1

MirGeneDB ID

Dre-Mir-27-P4a

Family name MIR-27 (all species)
Seed UCACAGU
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-27e
Paralogues Dre-Mir-27-P1  Dre-Mir-27-P2a  Dre-Mir-27-P2b  Dre-Mir-27-P3 
Orthologues Cmi-Mir-27-P4  Gmo-Mir-27-P4a  Lch-Mir-27-P4  Loc-Mir-27-P4  Mal-Mir-27-P4a  Sto-Mir-27-P4  Tni-Mir-27-P4a  Xtr-Mir-27-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(danRer11)
chr22: 5299972-5300035 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P4a)
Mir-23-P4a chr22: 5293226-5293289 [+] UCSC Ensembl
Mir-27-P4a chr22: 5299972-5300035 [+] UCSC Ensembl
Mir-24-P4a chr22: 5307502-5307561 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUCAAUCAGGUCAUCACUCGCUCACGGCGCAGAGCUUAGCUAAUCGGUGAGCAUUGAUCCCUUAAGAAAACUGUUCACAGUGGCUAAGUUCAGUGUCUGGAGUGAACGGGAUGACGGAGCGCGG
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Structure
        10          20        30        40        50        60  
UUCAAUCAGGUCAUCAC--|     AC     A           AUCG       UUGAUCCC 
                   UCGCUC  GGCGC GAGCUUAGCUA    GUGAGCA        U
                   AGUGAG  CUGUG CUUGAAUCGGU    CACUUGU        U
GGCGCGAGGCAGUAGGGCA^     GU     A           GA--       CAAAAGAA 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-27-P4a_5p*

mirBase accessionNone
Sequence
0- AGAGCUUAGCUAAUCGGUGAGCA -23
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Mature sequence

Dre-Mir-27-P4a_3p

mirBase accessionMIMAT0001800
Sequence
43- UUCACAGUGGCUAAGUUCAGU -64
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Proposed targets TargetScanFish: dre-miR-27e