MirGeneDB 3.0

MirGeneDB ID

Cmi-Mir-27-P4

Family name MIR-27 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-27-P2  Cmi-Mir-27-P3 
Orthologues Dre-Mir-27-P4a  Gmo-Mir-27-P4a  Gmo-Mir-27-P4b  Lch-Mir-27-P4  Loc-Mir-27-P4  Mal-Mir-27-P4a  Mal-Mir-27-P4b  Sto-Mir-27-P4  Tni-Mir-27-P4a  Tni-Mir-27-P4b  Xla-Mir-27-P4c  Xla-Mir-27-P4d  Xtr-Mir-27-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635918.1: 1565842-1565904 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P4)
Mir-23-P4 KI635918.1: 1564922-1564986 [+] UCSC Ensembl
Mir-27-P4 KI635918.1: 1565842-1565904 [+] UCSC Ensembl
Seed UCACAGU
Precursor
(pre-Mir +30nt flank)
AUCCCCAUAGCCUGAGCUCUGUGCUGGUAUAGAGCUUAGCCAUUUGGAGAGCAGUAUCAUUGGAGAGCUUUGUUCACAGUGGCUAAGUUUCAUACCCAGAGAGAAACAACGCAUUGUAUGAUC
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Structure
        10            20        30        40        50        60  
AUCCCCAUAGCCUGAGC----|  G  CU     AG            U GA    AGUAUCAUU 
                     UCU UG  GGUAU  AGCUUAGCCAUU G  GAGC         \
                     AGA AC  CCAUA  UUGAAUCGGUGA C  CUUG         G
CUAGUAUGUUACGCAACAAAG^  G  --     CU            - A-    UUUCGAGAG 
 120       110       100          90        80          70
Deep sequencing
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3' NTU Yes
MotifsNo
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-27-P4_5p* (predicted)

mirBase accessionNone
Sequence
0- AGAGCUUAGCCAUUUGGAGAGC -22
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Mature sequence

Cmi-Mir-27-P4_3p

mirBase accessionNone
Sequence
42- UUCACAGUGGCUAAGUUUCAU -63
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