MirGeneDB 3.0

MirGeneDB ID

Xla-Mir-27-P4c

Family name MIR-27 (all species)
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-27-P2c  Xla-Mir-27-P2d  Xla-Mir-27-P3c  Xla-Mir-27-P3d  Xla-Mir-27-P4d 
Orthologues Cmi-Mir-27-P4  Lch-Mir-27-P4  Loc-Mir-27-P4  Sto-Mir-27-P4  Xtr-Mir-27-P4 
Node of Origin (locus) X. laevis
Node of Origin (family) Vertebrata
Genome context
(GCF_001663975.1_XLA_v2)
NC_030730.1: 79670161-79670223 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-27-P4c)
Mir-27-P4c NC_030730.1: 79670161-79670223 [-] UCSC Ensembl
Mir-23-P4c NC_030730.1: 79670452-79670512 [-] UCSC Ensembl
Seed GGACUUA
Precursor
(pre-Mir +30nt flank)
GUCUACAAUAUUGAAAUUCUCCAGAGGGGAAGGACUUAGCUGGCUCUGUGAACAGGUCUUUUGUGUUCAAUGUUCACAGUGGCUAAGUUCCACCCCACUGGGAAACAUACUUCUACUGACUAU
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Structure
        10           20        30        40        50        60  
GUCUACAAUAUUGAAAU---| U    A    AA           GCU         GGUCUUU 
                    UC CCAG GGGG  GGACUUAGCUG   CUGUGAACA       U
                    AG GGUC CCCC  CUUGAAUCGGU   GACACUUGU       G
UAUCAGUCAUCUUCAUACAA^ -    A    AC           ---         AACUUGU 
 120       110        100        90        80           70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Em
Mature sequence

Xla-Mir-27-P4c_5p

mirBase accessionNone
Sequence
0- AGGACUUAGCUGGCUCUGUGAACA -24
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Star sequence

Xla-Mir-27-P4c_3p*

mirBase accessionNone
Sequence
42- UUCACAGUGGCUAAGUUCCAC -63
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