Mir-23-P4c

MirGeneDB ID

Xla-Mir-23-P4c

Family name

MIR-23 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-23-P2c Xla-Mir-23-P2d Xla-Mir-23-P3c Xla-Mir-23-P3d Xla-Mir-23-P4d

Orthologues

Cmi-Mir-23-P4 Lch-Mir-23-P4 Loc-Mir-23-P4 Sto-Mir-23-P4 Xtr-Mir-23-P4

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030730.1: 79670452-79670512 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P4c)

Mir-27-P4c NC_030730.1: 79670161-79670223 [-] UCSC Ensembl
Mir-23-P4c NC_030730.1: 79670452-79670512 [-] UCSC Ensembl

Seed

UCACAUU

Precursor
(pre-Mir +30nt flank)

GAGUCAUUUUUUUUUACCCUGCAGCUGGUAGGAUUCCUGGCAGAGUGAUUUGGCAAUGUAUGGUACAAAAUCACAUUGCCAGGGAUUUCCAAUCAGUCACAGGUCAAUCGUCCUCCUUUAG

Get precursor sequence

Structure

        10         20        30          40        50         
GAGUCAUUUUUUUUUAC-    CA      A   --|         A       GGCAAUG 
                  CCUG  GCUGGU GGA  UUCCUGGCAG GUGAUUU       U
                  GGAC  UGACUA CCU  AGGGACCGUU CACUAAA       A
GAUUUCCUCCUGCUAACU    AC      A   UU^         A       ACAUGGU 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-23-P4c_5p*

mirBase accession

None

Sequence

0- GGAUUCCUGGCAGAGUGAUUU -21

Get sequence

Mature sequence

Xla-Mir-23-P4c_3p

mirBase accession

None

Sequence

39- AUCACAUUGCCAGGGAUUUCCA -61

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