Mir-23-P3c

MirGeneDB ID

Xla-Mir-23-P3c

Family name

MIR-23 (all species)

Species

African clawed frog (Xenopus laevis)

MiRBase ID

xla-mir-23a

Paralogues

Xla-Mir-23-P2c Xla-Mir-23-P2d Xla-Mir-23-P3d Xla-Mir-23-P4c Xla-Mir-23-P4d

Orthologues

Aca-Mir-23-P3 Ami-Mir-23-P3 Bta-Mir-23-P3 Cfa-Mir-23-P3 Cja-Mir-23-P3 Cpi-Mir-23-P3 Cpo-Mir-23-P3 Dno-Mir-23-P3 Dre-Mir-23-P3 Eca-Mir-23-P3 Ete-Mir-23-P3 Gja-Mir-23-P3 Gmo-Mir-23-P3 Hsa-Mir-23-P3 Laf-Mir-23-P3 Lch-Mir-23-P3 Mal-Mir-23-P3 Mdo-Mir-23-P3 Mml-Mir-23-P3 Mmr-Mir-23-P3 Mmu-Mir-23-P3 Neu-Mir-23-P3 Oan-Mir-23-P3 Ocu-Mir-23-P3 Pab-Mir-23-P3 Pbv-Mir-23-P3 Rno-Mir-23-P3 Sha-Mir-23-P3 Sto-Mir-23-P3 Tgu-Mir-23-P3 Tni-Mir-23-P3 Xtr-Mir-23-P3

Node of Origin (locus)

X. laevis

Node of Origin (family)

Vertebrata

Genome context
(GCF_001663975.1_XLA_v2)

NC_030728.1: 133946064-133946127 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P3c)

Mir-23-P3c NC_030728.1: 133946064-133946127 [+] UCSC Ensembl
Mir-27-P3c NC_030728.1: 133946820-133946881 [+] UCSC Ensembl
Mir-24-P3c NC_030728.1: 133946953-133947013 [+] UCSC Ensembl

Seed

UCACAUU

Precursor
(pre-Mir +30nt flank)

GACCCGUGGCCCUUCUUGCUGCCGACAGCGGGGGAUUCCUGGAGAUGGGAUUUUAUUUUUGCAGCCAAUAAAUCACAUUGCCAGGGAUUUCCAACUGUCGGCUGCCCGGUCAGCGGCGCAACUU

Get precursor sequence

Structure

        10          20        30        40        50        60 
GACCCGUGGCCCUUCUU--| U        CG  GG        AG   G     UAUUUUU 
                   GC GCCGACAG  GG  AUUCCUGG  AUG GAUUU       G
                   CG CGGCUGUC  CC  UAGGGACC  UAC CUAAA       C
UUCAACGCGGCGACUGGCC^ U        AA  UU        GU   A     UAACCGA 
  120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Em

Star sequence

Xla-Mir-23-P3c_5p*

mirBase accession

None

Sequence

0- GGGGAUUCCUGGAGAUGGGAUUU -23

Get sequence

Mature sequence

Xla-Mir-23-P3c_3p

mirBase accession

MIMAT0011145

Sequence

41- AUCACAUUGCCAGGGAUUUCCAA -64

Get sequence