Mir-23-P3

MirGeneDB ID

Sto-Mir-23-P3

Family name

MIR-23 (all species)

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-23-P1 Sto-Mir-23-P2 Sto-Mir-23-P4

Orthologues

Aca-Mir-23-P3 Ami-Mir-23-P3 Bta-Mir-23-P3 Cfa-Mir-23-P3 Cja-Mir-23-P3 Cmi-Mir-23-P3a Cmi-Mir-23-P3b Cpi-Mir-23-P3 Cpo-Mir-23-P3 Dno-Mir-23-P3 Dre-Mir-23-P3 Eca-Mir-23-P3 Ete-Mir-23-P3 Gja-Mir-23-P3 Gmo-Mir-23-P3 Hsa-Mir-23-P3 Laf-Mir-23-P3 Lch-Mir-23-P3 Mal-Mir-23-P3 Mdo-Mir-23-P3 Mml-Mir-23-P3 Mmr-Mir-23-P3 Mmu-Mir-23-P3 Mun-Mir-23-P3e Mun-Mir-23-P3f Neu-Mir-23-P3 Oan-Mir-23-P3 Ocu-Mir-23-P3 Pab-Mir-23-P3 Pbv-Mir-23-P3 Rno-Mir-23-P3 Sha-Mir-23-P3 Tgu-Mir-23-P3 Tni-Mir-23-P3 Xla-Mir-23-P3c Xla-Mir-23-P3d Xtr-Mir-23-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_003427355_STO_add)

BFAA01001728.1: 158875-158934 [-]

Clustered miRNAs
(< 50kb from Mir-23-P3)

Mir-24-P3 BFAA01001728.1: 147134-147193 [-]
Mir-27-P3a BFAA01001728.1: 154600-154664 [-]
Mir-23-P3 BFAA01001728.1: 158875-158934 [-]

Seed

UCACAUU

Precursor
(pre-Mir +30nt flank)

ACUGCAAGAUAUUGCUUGCUGUGGCUGGCUGGGUUCCUGGCAGAGUGAUUUGAUUUAAUAAUGUAAAAUCACAUUGCCAGGGAUUACCAACCUGUCACCAGCUUUUACCAACCACUCCUA

Get precursor sequence

Structure

        10         20         30          40        50        
ACUGCAAGAUAUUGCUU-   -     U  C   --|          A       GAUUUA 
                  GCU GUGGC GG UGG  GUUCCUGGCAG GUGAUUU      A
                  CGA CACUG CC ACC  UAGGGACCGUU CACUAAA      U
AUCCUCACCAACCAUUUU   C     U  A   AU^          A       AUGUAA 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14)

Tissue expression

To

Star sequence

Sto-Mir-23-P3_5p*

mirBase accession

None

Sequence

0- GGGUUCCUGGCAGAGUGAUUU -21

Get sequence

Mature sequence

Sto-Mir-23-P3_3p

mirBase accession

None

Sequence

37- AUCACAUUGCCAGGGAUUACCAA -60

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