MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-23-P3

Family name MIR-23 (all species)
Seed UCACAUU
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-23a-3
Paralogues Tni-Mir-23-P1  Tni-Mir-23-P2b  Tni-Mir-23-P4a 
Orthologues Aca-Mir-23-P3  Ami-Mir-23-P3  Bta-Mir-23-P3  Cfa-Mir-23-P3  Cmi-Mir-23-P3a  Cmi-Mir-23-P3b  Cpi-Mir-23-P3  Cpo-Mir-23-P3  Dno-Mir-23-P3  Dre-Mir-23-P3  Ete-Mir-23-P3  Gja-Mir-23-P3  Gmo-Mir-23-P3  Hsa-Mir-23-P3  Lch-Mir-23-P3  Mal-Mir-23-P3  Mdo-Mir-23-P3  Mml-Mir-23-P3  Mmu-Mir-23-P3  Mun-Mir-23-P3e  Mun-Mir-23-P3f  Oan-Mir-23-P3  Ocu-Mir-23-P3  Pbv-Mir-23-P3  Rno-Mir-23-P3  Sha-Mir-23-P3  Sto-Mir-23-P3  Tgu-Mir-23-P3  Xla-Mir-23-P3c  Xla-Mir-23-P3d  Xtr-Mir-23-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
3: 8969974-8970035 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P3)
Mir-23-P3 3: 8969974-8970035 [+] UCSC Ensembl
Mir-27-P3 3: 8970188-8970245 [+] UCSC Ensembl
Mir-24-P3 3: 8971072-8971130 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CACCACACGCUGUUGUGUCUGUUGGCCAGGGGAAUUCCUGGCAGAGUGAUUUUUGAGACUACAGGACUGAAUCACAUUGCCAGGGAUUUCCAAUGGCUGACACGAAGAAAGCACGCUCAUUU
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Structure
        10         20         30        40        50        60
CACCACACGCUGUUGUGUC-   UG    G-|              A       UUGAGAC 
                    UGU  GCCA  GGGAAUUCCUGGCAG GUGAUUU       U
                    ACA  CGGU  CCUUUAGGGACCGUU CACUAAG       A
UUUACUCGCACGAAAGAAGC   GU    AA^              A       UCAGGAC 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-23-P3_5p*

mirBase accessionNone
Sequence
0- GGAAUUCCUGGCAGAGUGAUUU -22
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Mature sequence

Tni-Mir-23-P3_3p

mirBase accessionMIMAT0002913
Sequence
40- AUCACAUUGCCAGGGAUUUCCA -62
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