Mir-23-P3

MirGeneDB ID

Tni-Mir-23-P3

Family name

MIR-23 (all species)

Species

Pufferfish (Tetraodon nigroviridis)

MiRBase ID

tni-mir-23a-3

Paralogues

Tni-Mir-23-P1 Tni-Mir-23-P2b Tni-Mir-23-P4a

Orthologues

Aca-Mir-23-P3 Ami-Mir-23-P3 Bta-Mir-23-P3 Cfa-Mir-23-P3 Cja-Mir-23-P3 Cmi-Mir-23-P3a Cmi-Mir-23-P3b Cpi-Mir-23-P3 Cpo-Mir-23-P3 Dno-Mir-23-P3 Dre-Mir-23-P3 Eca-Mir-23-P3 Ete-Mir-23-P3 Gja-Mir-23-P3 Gmo-Mir-23-P3 Hsa-Mir-23-P3 Laf-Mir-23-P3 Lch-Mir-23-P3 Mal-Mir-23-P3 Mdo-Mir-23-P3 Mml-Mir-23-P3 Mmr-Mir-23-P3 Mmu-Mir-23-P3 Mun-Mir-23-P3e Mun-Mir-23-P3f Neu-Mir-23-P3 Oan-Mir-23-P3 Ocu-Mir-23-P3 Pab-Mir-23-P3 Pbv-Mir-23-P3 Rno-Mir-23-P3 Sha-Mir-23-P3 Sto-Mir-23-P3 Tgu-Mir-23-P3 Xla-Mir-23-P3c Xla-Mir-23-P3d Xtr-Mir-23-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)

3: 8969974-8970035 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P3)

Mir-23-P3 3: 8969974-8970035 [+] UCSC Ensembl
Mir-27-P3 3: 8970188-8970245 [+] UCSC Ensembl
Mir-24-P3 3: 8971072-8971130 [+] UCSC Ensembl

Seed

UCACAUU

Precursor
(pre-Mir +30nt flank)

CACCACACGCUGUUGUGUCUGUUGGCCAGGGGAAUUCCUGGCAGAGUGAUUUUUGAGACUACAGGACUGAAUCACAUUGCCAGGGAUUUCCAAUGGCUGACACGAAGAAAGCACGCUCAUUU

Get precursor sequence

Structure

        10         20         30        40        50        60
CACCACACGCUGUUGUGUC-   UG    G-|              A       UUGAGAC 
                    UGU  GCCA  GGGAAUUCCUGGCAG GUGAUUU       U
                    ACA  CGGU  CCUUUAGGGACCGUU CACUAAG       A
UUUACUCGCACGAAAGAAGC   GU    AA^              A       UCAGGAC 
120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Sp	Sp	Sp	To

Star sequence

Tni-Mir-23-P3_5p*

mirBase accession

None

Sequence

0- GGAAUUCCUGGCAGAGUGAUUU -22

Get sequence

Mature sequence

Tni-Mir-23-P3_3p

mirBase accession

MIMAT0002913

Sequence

40- AUCACAUUGCCAGGGAUUUCCA -62

Get sequence