Mir-23-P3

MirGeneDB ID

Ete-Mir-23-P3

Family name

MIR-23 (all species)

Species

Lesser hedgehog tenrec (Echinops telfairi)

MiRBase ID

Paralogues

Ete-Mir-23-P2

Orthologues

Aca-Mir-23-P3 Ami-Mir-23-P3 Bta-Mir-23-P3 Cfa-Mir-23-P3 Cja-Mir-23-P3 Cmi-Mir-23-P3a Cmi-Mir-23-P3b Cpi-Mir-23-P3 Cpo-Mir-23-P3 Dno-Mir-23-P3 Dre-Mir-23-P3 Eca-Mir-23-P3 Gja-Mir-23-P3 Gmo-Mir-23-P3 Hsa-Mir-23-P3 Laf-Mir-23-P3 Lch-Mir-23-P3 Mal-Mir-23-P3 Mdo-Mir-23-P3 Mml-Mir-23-P3 Mmr-Mir-23-P3 Mmu-Mir-23-P3 Mun-Mir-23-P3e Mun-Mir-23-P3f Neu-Mir-23-P3 Oan-Mir-23-P3 Ocu-Mir-23-P3 Pab-Mir-23-P3 Pbv-Mir-23-P3 Rno-Mir-23-P3 Sha-Mir-23-P3 Sto-Mir-23-P3 Tgu-Mir-23-P3 Tni-Mir-23-P3 Xla-Mir-23-P3c Xla-Mir-23-P3d Xtr-Mir-23-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(echTel2)

JH980397: 3706134-3706192 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-23-P3)

Mir-181-P2c JH980397: 3680901-3680964 [-] UCSC
Mir-181-P1c JH980397: 3681114-3681174 [-] UCSC
Mir-23-P3 JH980397: 3706134-3706192 [+] UCSC
Mir-27-P3 JH980397: 3706321-3706382 [+] UCSC
Mir-24-P3 JH980397: 3706485-3706544 [+] UCSC

Seed

UCACAUU

Precursor
(pre-Mir +30nt flank)

CGGUGCCCCCACCCUGUGCCACGGCCGGCGGGGGUUCCUGGGGAUGGGAUUUGCUACCUGUCACAAAUCACAUUGCCAGGGAUUUCCAACCGACCCUGGGCCCUGCCGUCGGGCCACCG

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Structure

        10         20          30        40        50        
CGGUGCCCCCACCCUGU-   AC-  C   C-| GG        G    G     GCUAC 
                  GCC   GG CGG  GG  GUUCCUGG GAUG GAUUU     C
                  CGG   CC GCC  CC  UAGGGACC UUAC CUAAA     U
GCCACCGGGCUGCCGUCC   GUC  A   AA^ UU        G    A     CACUG 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Ete-Mir-23-P3_5p*

mirBase accession

None

Sequence

0- GGGGUUCCUGGGGAUGGGAUUU -22

Get sequence

Mature sequence

Ete-Mir-23-P3_3p

mirBase accession

None

Sequence

36- AUCACAUUGCCAGGGAUUUCCAA -59

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