MirGeneDB 2.1

MirGeneDB ID

Aca-Mir-23-P3

Family name MIR-23 (all species)
Seed UCACAUU
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-23a
Paralogues Aca-Mir-23-P2 
Orthologues Ami-Mir-23-P3  Bta-Mir-23-P3  Cfa-Mir-23-P3  Cmi-Mir-23-P3a  Cmi-Mir-23-P3b  Cpi-Mir-23-P3  Cpo-Mir-23-P3  Dno-Mir-23-P3  Dre-Mir-23-P3  Ete-Mir-23-P3  Gja-Mir-23-P3  Gmo-Mir-23-P3  Hsa-Mir-23-P3  Lch-Mir-23-P3  Mal-Mir-23-P3  Mdo-Mir-23-P3  Mml-Mir-23-P3  Mmu-Mir-23-P3  Mun-Mir-23-P3e  Mun-Mir-23-P3f  Oan-Mir-23-P3  Ocu-Mir-23-P3  Pbv-Mir-23-P3  Rno-Mir-23-P3  Sha-Mir-23-P3  Sto-Mir-23-P3  Tgu-Mir-23-P3  Tni-Mir-23-P3  Xla-Mir-23-P3c  Xla-Mir-23-P3d  Xtr-Mir-23-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(anoCar2)
2: 29158348-29158408 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P3)
Mir-24-P3 2: 29157652-29157711 [-] UCSC Ensembl
Mir-27-P3 2: 29157937-29157998 [-] UCSC Ensembl
Mir-23-P3 2: 29158348-29158408 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGAUGUCUCUAUAUUGUGCCGCUGCCAGCUGGGGUUCCUGGUGAUGUGAUUUUAUUUUGGUGUUCAGAAUCACAUUGCCAGGGAUUUCCAACCAUCAGUGAGCUACCGCACCUGAGAAGUG
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Structure
        10          20        30         40        50         
AGAUGUCUCUAUAUUGU-  -     CCAGC   -|        UG         UAUUUU 
                  GC CGCUG     UGG GGUUCCUGG  AUGUGAUUU      G
                  CG GUGAC     ACC UUAGGGACC  UACACUAAG      G
GUGAAGAGUCCACGCCAU  A     UACCA   U^        GU         ACUUGU 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Sk To Wh
Star sequence

Aca-Mir-23-P3_5p*

mirBase accessionMIMAT0021895
Sequence
0- GGGGUUCCUGGUGAUGUGAUUU -22
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Mature sequence

Aca-Mir-23-P3_3p

mirBase accessionMIMAT0021896
Sequence
38- AUCACAUUGCCAGGGAUUUCCAA -61
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