Mir-23-P3

MirGeneDB ID

Ocu-Mir-23-P3

Family name

MIR-23 (all species)

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

Paralogues

Ocu-Mir-23-P2

Orthologues

Aca-Mir-23-P3 Ami-Mir-23-P3 Bta-Mir-23-P3 Cfa-Mir-23-P3 Cja-Mir-23-P3 Cmi-Mir-23-P3a Cmi-Mir-23-P3b Cpi-Mir-23-P3 Cpo-Mir-23-P3 Dno-Mir-23-P3 Dre-Mir-23-P3 Eca-Mir-23-P3 Ete-Mir-23-P3 Gja-Mir-23-P3 Gmo-Mir-23-P3 Hsa-Mir-23-P3 Laf-Mir-23-P3 Lch-Mir-23-P3 Mal-Mir-23-P3 Mdo-Mir-23-P3 Mml-Mir-23-P3 Mmr-Mir-23-P3 Mmu-Mir-23-P3 Mun-Mir-23-P3e Mun-Mir-23-P3f Neu-Mir-23-P3 Oan-Mir-23-P3 Pab-Mir-23-P3 Pbv-Mir-23-P3 Rno-Mir-23-P3 Sha-Mir-23-P3 Sto-Mir-23-P3 Tgu-Mir-23-P3 Tni-Mir-23-P3 Xla-Mir-23-P3c Xla-Mir-23-P3d Xtr-Mir-23-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(oryCun2_add)

VIYN01006261.1: 192406-192464 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P3)

Mir-27-P3 VIYN01006261.1: 192288-192349 [-] UCSC Ensembl
Mir-23-P3 VIYN01006261.1: 192406-192464 [-] UCSC Ensembl
Mir-181-P2c VIYN01006261.1: 210921-210983 [+] UCSC Ensembl

Seed

UCACAUU

Precursor
(pre-Mir +30nt flank)

CCCCCCCGGUCCCCUGUGCCAUGGCCGGUUGGGGUUCCUGGGGAUGGGAUUUGCUGUAAGUCACAAAUCACAUUGCCAGGGAAUUCCAACCGACCCUGUGCCCUGCCGCCGCCGCCGCU

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Structure

        10          20        30         40        50        
CCCCCCCGGUCCCCUGU-  -  U  C           -|    G    G     GCUGU 
                  GC CA GG CGGUUGGGGUU CCUGG GAUG GAUUU     A
                  CG GU CC GCCAACCUUAA GGACC UUAC CUAAA     A
UCGCCGCCGCCGCCGUCC  U  C  A           G^    G    A     CACUG 
       110       100        90        80        70        60

Deep sequencing

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Comment

Not in assembly but in trace archives.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

He	Ki	Te	To	Wh

Star sequence

Ocu-Mir-23-P3_5p*

mirBase accession

None

Sequence

0- GGGGUUCCUGGGGAUGGGAUUU -22

Get sequence

Mature sequence

Ocu-Mir-23-P3_3p

mirBase accession

None

Sequence

36- AUCACAUUGCCAGGGAAUUCCAA -59

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