MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-23-P3a

Family name MIR-23 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-23-P2  Cmi-Mir-23-P3b  Cmi-Mir-23-P4 
Orthologues Aca-Mir-23-P3  Ami-Mir-23-P3  Bta-Mir-23-P3  Cfa-Mir-23-P3  Cja-Mir-23-P3  Cpi-Mir-23-P3  Cpo-Mir-23-P3  Dno-Mir-23-P3  Dre-Mir-23-P3  Eca-Mir-23-P3  Ete-Mir-23-P3  Gja-Mir-23-P3  Gmo-Mir-23-P3  Hsa-Mir-23-P3  Laf-Mir-23-P3  Lch-Mir-23-P3  Mal-Mir-23-P3  Mdo-Mir-23-P3  Mml-Mir-23-P3  Mmr-Mir-23-P3  Mmu-Mir-23-P3  Neu-Mir-23-P3  Oan-Mir-23-P3  Ocu-Mir-23-P3  Pab-Mir-23-P3  Pbv-Mir-23-P3  Rno-Mir-23-P3  Sha-Mir-23-P3  Sto-Mir-23-P3  Tgu-Mir-23-P3  Tni-Mir-23-P3  Xtr-Mir-23-P3 
Node of Origin (locus) C. milii
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635928.1: 353511-353570 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P3a)		 Mir-23-P3a KI635928.1: 353511-353570 [+] UCSC Ensembl
Mir-27-P3 KI635928.1: 354256-354321 [+] UCSC Ensembl
Mir-24-P3 KI635928.1: 356764-356823 [+] UCSC Ensembl
Seed UCACAUU
Precursor
(pre-Mir +30nt flank)		 
NNNNNAGGAUGGAAUCUGCUGUGGUGGGCUGGGUUCCUGGCAGAGUGAUUUGAUUUAAUAAUGUAAAAUCACAUUGCCAGGGAUUACCAACCCGUCACAGGCCACUGUCGACCGCCCCUC
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Structure
        10          20        30          40        50        
NNNNNAGGAUGGAAUCUG--     GU   C   --|          A       GAUUUA 
                    CUGUG  GGG UGG  GUUCCUGGCAG GUGAUUU      A
                    GACAC  CCC ACC  UAGGGACCGUU CACUAAA      U
CUCCCCGCCAGCUGUCACCG     UG   A   AU^          A       AUGUAA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-23-P3a_5p*
mirBase accessionNone
Sequence 
0- GGGUUCCUGGCAGAGUGAUUU -21
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Mature sequence

Cmi-Mir-23-P3a_3p
mirBase accessionNone
Sequence 
37- AUCACAUUGCCAGGGAUUACCAA -60
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