MirGeneDB 2.1

MirGeneDB ID

Cpo-Mir-23-P3

Family name MIR-23 (all species)
Seed UCACAUU
Species Guinea pig (Cavia porcellus)
MiRBase ID cpo-mir-23a
Paralogues Cpo-Mir-23-P2 
Orthologues Aca-Mir-23-P3  Ami-Mir-23-P3  Bta-Mir-23-P3  Cfa-Mir-23-P3  Cmi-Mir-23-P3a  Cmi-Mir-23-P3b  Cpi-Mir-23-P3  Dno-Mir-23-P3  Dre-Mir-23-P3  Ete-Mir-23-P3  Gja-Mir-23-P3  Gmo-Mir-23-P3  Hsa-Mir-23-P3  Lch-Mir-23-P3  Mal-Mir-23-P3  Mdo-Mir-23-P3  Mml-Mir-23-P3  Mmu-Mir-23-P3  Mun-Mir-23-P3e  Mun-Mir-23-P3f  Oan-Mir-23-P3  Ocu-Mir-23-P3  Pbv-Mir-23-P3  Rno-Mir-23-P3  Sha-Mir-23-P3  Sto-Mir-23-P3  Tgu-Mir-23-P3  Tni-Mir-23-P3  Xla-Mir-23-P3c  Xla-Mir-23-P3d  Xtr-Mir-23-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(cavPor3)
scaffold_42: 12931646-12931704 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-23-P3)
Mir-181-P1c scaffold_42: 12912419-12912479 [-] UCSC
Mir-23-P3 scaffold_42: 12931646-12931704 [+] UCSC
Mir-27-P3 scaffold_42: 12931848-12931908 [+] UCSC
Mir-24-P3 scaffold_42: 12931984-12932043 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AGGGCCCCUGCCCCCGUGCCACGGUCAGCUGGGGUUCCUGGGGAUGGGAUUUGCUGUCUGUCACAAAUCACAUUGCCAGGGAUUUCCAACUGACCCUGAGCUCUGCCUCCAGGGCCACC
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Structure
        10          20        30         40        50        
AGGGCCCCUGCCCCCGU-  -  C      C   -|        G    G     GCUGU 
                  GC CA GGUCAG UGG GGUUCCUGG GAUG GAUUU     C
                  CG GU CCAGUC ACC UUAGGGACC UUAC CUAAA     U
CCACCGGGACCUCCGUCU  A  C      A   U^        G    A     CACUG 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Cpo-Mir-23-P3_5p*

mirBase accessionMIMAT0046876
Sequence
0- GGGGUUCCUGGGGAUGGGAUUU -22
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Mature sequence

Cpo-Mir-23-P3_3p

mirBase accessionMIMAT0046877
Sequence
36- AUCACAUUGCCAGGGAUUUCCAA -59
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