Mir-23-P3

MirGeneDB ID

Mmr-Mir-23-P3

Family name

MIR-23 (all species)

Species

Gray mouse lemur (Microcebus murinus)

MiRBase ID

Paralogues

Mmr-Mir-23-P2

Orthologues

Aca-Mir-23-P3 Ami-Mir-23-P3 Bta-Mir-23-P3 Cfa-Mir-23-P3 Cja-Mir-23-P3 Cmi-Mir-23-P3a Cmi-Mir-23-P3b Cpi-Mir-23-P3 Cpo-Mir-23-P3 Dno-Mir-23-P3 Dre-Mir-23-P3 Eca-Mir-23-P3 Ete-Mir-23-P3 Gja-Mir-23-P3 Gmo-Mir-23-P3 Hsa-Mir-23-P3 Laf-Mir-23-P3 Lch-Mir-23-P3 Mal-Mir-23-P3 Mdo-Mir-23-P3 Mml-Mir-23-P3 Mmu-Mir-23-P3 Mun-Mir-23-P3e Mun-Mir-23-P3f Neu-Mir-23-P3 Oan-Mir-23-P3 Ocu-Mir-23-P3 Pab-Mir-23-P3 Pbv-Mir-23-P3 Rno-Mir-23-P3 Sha-Mir-23-P3 Sto-Mir-23-P3 Tgu-Mir-23-P3 Tni-Mir-23-P3 Xla-Mir-23-P3c Xla-Mir-23-P3d Xtr-Mir-23-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_000165445.3_Mmur_3.0_genomic)

CM007684.1: 1346006-1346064 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-23-P3)

Mir-24-P3 CM007684.1: 1345695-1345754 [-] UCSC Ensembl
Mir-27-P3 CM007684.1: 1345853-1345914 [-] UCSC Ensembl
Mir-23-P3 CM007684.1: 1346006-1346064 [-] UCSC Ensembl
Mir-181-P1c CM007684.1: 1384979-1385039 [+] UCSC Ensembl
Mir-181-P2c CM007684.1: 1385163-1385227 [+] UCSC Ensembl

Seed

UCACAUU

Precursor
(pre-Mir +30nt flank)

UGUCCCCUCACCCCUGUGCCAUGGCCGGCUGGGGUUCCUGGGGAUGGGAUUUGCUACCUAUCACAAAUCACAUUGCCAGGGAUUUCCAACCGACCCUGAGCUCUGGCGCCGAGGAUGCU

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Structure

        10          20        30         40        50        
UGUCCCCUCACCCCUGU-  -  U  C   C   -|        G    G     GCUAC 
                  GC CA GG CGG UGG GGUUCCUGG GAUG GAUUU     C
                  CG GU CC GCC ACC UUAGGGACC UUAC CUAAA     U
UCGUAGGAGCCGCGGUCU  A  C  A   A   U^        G    A     CACUA 
       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Mu	Mu	Mu	Mu	Mu	Mu	Mu	Mu

Star sequence

Mmr-Mir-23-P3_5p*

mirBase accession

None

Sequence

0- GGGGUUCCUGGGGAUGGGAUUU -22

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Mature sequence

Mmr-Mir-23-P3_3p

mirBase accession

None

Sequence

36- AUCACAUUGCCAGGGAUUUCCAA -59

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