MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-23-P3

Family name MIR-23 (all species)
Seed UCACAUU
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-23a-1
Paralogues Xtr-Mir-23-P2  Xtr-Mir-23-P4 
Orthologues Aca-Mir-23-P3  Ami-Mir-23-P3  Bta-Mir-23-P3  Cfa-Mir-23-P3  Cmi-Mir-23-P3a  Cmi-Mir-23-P3b  Cpi-Mir-23-P3  Cpo-Mir-23-P3  Dno-Mir-23-P3  Dre-Mir-23-P3  Ete-Mir-23-P3  Gja-Mir-23-P3  Gmo-Mir-23-P3  Hsa-Mir-23-P3  Lch-Mir-23-P3  Mal-Mir-23-P3  Mdo-Mir-23-P3  Mml-Mir-23-P3  Mmu-Mir-23-P3  Mun-Mir-23-P3e  Mun-Mir-23-P3f  Oan-Mir-23-P3  Ocu-Mir-23-P3  Pbv-Mir-23-P3  Rno-Mir-23-P3  Sha-Mir-23-P3  Sto-Mir-23-P3  Tgu-Mir-23-P3  Tni-Mir-23-P3  Xla-Mir-23-P3c  Xla-Mir-23-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr3: 129998679-129998742 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-23-P3)
Mir-23-P3 chr3: 129998679-129998742 [+] UCSC Ensembl
Mir-27-P3 chr3: 129999287-129999348 [+] UCSC Ensembl
Mir-24-P3 chr3: 129999419-129999478 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCCCGUGGGCCCUUCUUGCUGCUGACAGCGGGGGAUUCCUGGAGAUGGGAUUUUAUUUUGGCAGCCAAUAAAUCACAUUGCCAGGGAUUUCCAACUGUCGGCCGCCCGGUCAGCGGCGCAACUU
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Structure
        10          20        30        40        50        60 
CCCCGUGGGCCCUUCUU--| U        CG  GG        AG   G     UAUUUUG 
                   GC GCUGACAG  GG  AUUCCUGG  AUG GAUUU       G
                   CG CGGCUGUC  CC  UAGGGACC  UAC CUAAA       C
UUCAACGCGGCGACUGGCC^ C        AA  UU        GU   A     UAACCGA 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-23-P3_5p*

mirBase accessionNone
Sequence
0- GGGGAUUCCUGGAGAUGGGAUUU -23
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Mature sequence

Xtr-Mir-23-P3_3p

mirBase accessionMIMAT0003568
Sequence
41- AUCACAUUGCCAGGGAUUUCCAA -64
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Proposed targets TargetScanVert: xtr-miR-23a