MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-24-P3

Family name MIR-24 (all species)
Seed GGCUCAG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-24b
Paralogues Xtr-Mir-24-P2 
Orthologues Aca-Mir-24-P3  Ami-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cmi-Mir-24-P3  Cpi-Mir-24-P3  Cpo-Mir-24-P3  Dno-Mir-24-P3  Dre-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Gmo-Mir-24-P3  Hsa-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmu-Mir-24-P3  Mun-Mir-24-P3a  Mun-Mir-24-P3b  Oan-Mir-24-P3  Ocu-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Sto-Mir-24-P3  Tgu-Mir-24-P3  Tni-Mir-24-P3  Xla-Mir-24-P3c  Xla-Mir-24-P3d 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(xenTro9_add)
chr3: 129999419-129999478 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P3)
Mir-23-P3 chr3: 129998679-129998742 [+] UCSC Ensembl
Mir-27-P3 chr3: 129999287-129999348 [+] UCSC Ensembl
Mir-24-P3 chr3: 129999419-129999478 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUCAUAGCGCCUGACUGGCUCCGCCUCCCGUACCUACUGGGCUGAUAAUCAGUGGUUAUAUCUUCCCCUGGCUCAGUUCAGCAGGACAGGAGUUGCAGCCGAGUACCUGCCGACCGAAC
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Structure
        10          20        30        40        50        60 
AGUCAUAGCGCCUGACU--|   C  C    C  A   A         UAA    UGGUUAU 
                   GGCU CG CUCC GU CCU CUGGGCUGA   UCAG       \
                   CCGA GU GAGG CA GGA GACUUGACU   GGUC       A
CAAGCCAGCCGUCCAUGAG^   C  U    A  -   C         C--    CCCUUCU 
.       110       100        90         80          70
Deep sequencing
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CommentThere is a second Drosha cut -1 on both arms.
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Em Em Em Em He
Star sequence

Xtr-Mir-24-P3_5p*

mirBase accessionNone
Sequence
0- GUACCUACUGGGCUGAUAAUCAGU -24
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Mature sequence

Xtr-Mir-24-P3_3p

mirBase accessionMIMAT0003655
Sequence
39- UGGCUCAGUUCAGCAGGACAG -60
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Proposed targets TargetScanVert: xtr-miR-24b