MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-24-P3

Family name MIR-24 (all species)
Seed GGCUCAG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-24-2
Paralogues Tni-Mir-24-P1  Tni-Mir-24-P2b  Tni-Mir-24-P4a  Tni-Mir-24-P4b 
Orthologues Aca-Mir-24-P3  Ami-Mir-24-P3  Bta-Mir-24-P3  Cfa-Mir-24-P3  Cmi-Mir-24-P3  Cpi-Mir-24-P3  Cpo-Mir-24-P3  Dno-Mir-24-P3  Dre-Mir-24-P3  Ete-Mir-24-P3  Gga-Mir-24-P3  Gja-Mir-24-P3  Gmo-Mir-24-P3  Hsa-Mir-24-P3  Lch-Mir-24-P3  Loc-Mir-24-P3  Mdo-Mir-24-P3  Mml-Mir-24-P3  Mmu-Mir-24-P3  Mun-Mir-24-P3a  Mun-Mir-24-P3b  Oan-Mir-24-P3  Ocu-Mir-24-P3  Pbv-Mir-24-P3  Rno-Mir-24-P3  Sha-Mir-24-P3  Sto-Mir-24-P3  Tgu-Mir-24-P3  Xla-Mir-24-P3c  Xla-Mir-24-P3d  Xtr-Mir-24-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
3: 8971072-8971130 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P3)
Mir-23-P3 3: 8969974-8970035 [+] UCSC Ensembl
Mir-27-P3 3: 8970188-8970245 [+] UCSC Ensembl
Mir-24-P3 3: 8971072-8971130 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUUCCAACUUCCAGCUGGGUCAGUCUCCUGUGCCUGCUGUGCUGAUAAUCAGUGUGUGACGUUGGCUGGCUCAGUUCAGCAGGAACAGGGGACUGGGUUCAAUAUCACACACUCACAC
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Structure
        10         20         30        40        50          
UCUUCCAACUUCCAGCU- GG -|          G       U     UAA     GUGUG 
                  G  U CAGUCUCCUGU CCUGCUG GCUGA   UCAGU     \
                  C  G GUCAGGGGACA GGACGAC UGACU   GGUCG     A
CACACUCACACACUAUAA UU G^          A       U     C--     GUUGC 
       110       100        90        80          70
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU Yes
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-24-P3_5p*

mirBase accessionNone
Sequence
0- GUGCCUGCUGUGCUGAUAAUCAGU -24
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Mature sequence

Tni-Mir-24-P3_3p

mirBase accessionMIMAT0003066
Sequence
37- UGGCUCAGUUCAGCAGGAACAG -59
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