MirGeneDB 2.1

MirGeneDB ID

Tni-Mir-24-P4a

Family name MIR-24 (all species)
Seed GGCUCAG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-24-P1  Tni-Mir-24-P2b  Tni-Mir-24-P3  Tni-Mir-24-P4b 
Orthologues Dre-Mir-24-P4a  Gmo-Mir-24-P4a  Lch-Mir-24-P4  Loc-Mir-24-P4  Mal-Mir-24-P4a  Sto-Mir-24-P4 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
1: 16060478-16060537 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P4a)
Mir-23-P4a 1: 16058804-16058867 [+] UCSC Ensembl
Mir-27-P4a 1: 16059190-16059253 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCAUCGCUCACGUCUGGGUUGUGCCCUCCUGUGCCUACUGAACUGGUAUCAGUGUUUUACUGGAAAACUGGCUCAGUUCAGCAGGAACAGGAGUGCAGCCUUUUCUCCGUCAGGAUCCAA
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Structure
        10            20        30        40        50          
CCAUCGCUCACGUCUGG----|   UG CC      G   A         UA   GUGUUUUA 
                     GUUG  C  UCCUGU CCU CUGAACUGG  UCA        \
                     CGAC  G  AGGACA GGA GACUUGACU  GGU        C
AACCUAGGACUGCCUCUUUUC^   GU --      A   C         C-   CAAAAGGU 
.       110       100          90        80         70
Deep sequencing
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CommentThere are Drosha cuts -1 and +1 on the 5p arm.
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-24-P4a_5p*

mirBase accessionNone
Sequence
0- GUGCCUACUGAACUGGUAUCA -21
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Mature sequence

Tni-Mir-24-P4a_3p

mirBase accessionNone
Sequence
38- UGGCUCAGUUCAGCAGGAACAG -60
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