MirGeneDB 3.0

MirGeneDB ID

Loc-Mir-24-P4

Family name MIR-24 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-24-P1  Loc-Mir-24-P2  Loc-Mir-24-P3 
Orthologues Dre-Mir-24-P4a  Gmo-Mir-24-P4a  Gmo-Mir-24-P4b  Lch-Mir-24-P4  Mal-Mir-24-P4a  Mal-Mir-24-P4b  Sto-Mir-24-P4  Tni-Mir-24-P4a  Tni-Mir-24-P4b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)
LG19: 5781223-5781282 [+] Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P4)
Mir-23-P4 LG19: 5779627-5779689 [+] Ensembl
Mir-27-P4 LG19: 5780510-5780573 [+] Ensembl
Mir-24-P4 LG19: 5781223-5781282 [+] Ensembl
Seed GGCUCAG
Precursor
(pre-Mir +30nt flank)
GACAUGUUGCUGCUGGGGCUGUGACCUCCCGUGCCUACUGAACUGAUAUCAGUGUGUGUACGGAAUACUGGCUCAGUUCAGCAGGAACAGGAGUUAAGCCCAACUGUACACCAUUACCUC
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Structure
        10            20        30        40        50          
GACAUGUUGCUGCUGGG----|  G    C   C  G   A         UA    UGUGUGU 
                     GCU UGAC UCC GU CCU CUGAACUGA  UCAG       \
                     CGA AUUG AGG CA GGA GACUUGACU  GGUC       A
CUCCAUUACCACAUGUCAACC^  -    -   A  A   C         C-    AUAAGGC 
.       110       100          90        80         70
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU Yes
MotifsUGUG in loop
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-24-P4_5p*

mirBase accessionNone
Sequence
0- GUGCCUACUGAACUGAUAUCAG -22
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Mature sequence

Loc-Mir-24-P4_3p

mirBase accessionNone
Sequence
38- UGGCUCAGUUCAGCAGGAACAG -60
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