MirGeneDB 2.1

MirGeneDB ID

Gmo-Mir-24-P4b

Family name MIR-24 (all species)
Seed UGCCUAC
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-24b
Paralogues Gmo-Mir-24-P1  Gmo-Mir-24-P2b  Gmo-Mir-24-P3  Gmo-Mir-24-P4a 
Orthologues Lch-Mir-24-P4  Loc-Mir-24-P4  Mal-Mir-24-P4b  Sto-Mir-24-P4  Tni-Mir-24-P4b 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Vertebrata
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_2105: 1931716-1931773 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P4b)
Mir-27-P4b GeneScaffold_2105: 1930293-1930354 [+] UCSC Ensembl
Mir-24-P4b GeneScaffold_2105: 1931716-1931773 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGACCCCUGGGUUAGGGUUUAUGUACUCCUGUGCCUACUGUACUGGAAUCAGUGUGACCAUGAAACUGGCUCAGUCCAGCAGGGACAGCAGUGAGACCCGAUUUCUGGACCAAUGCCG
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Structure
        10        20          30        40        50         
AGACCCCUGGGUUAGGGUUUAUG--|   C    G   A   U    G AU    GUGAC 
                         UACU CUGU CCU CUG ACUG A  CAGU     \
                         GUGA GACA GGA GAC UGAC U  GUCA     C
GCCGUAACCAGGUCUUUAGCCCAGA^   C    G   C   C    - CG    AAGUA 
      110       100        90        80         70        60
Deep sequencing
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CommentThere is a second Drosha cut +1 on the 5p arm.
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-24-P4b_5p

mirBase accessionMIMAT0044174
Sequence
0- GUGCCUACUGUACUGGAAUCAGU -23
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Star sequence

Gmo-Mir-24-P4b_3p*

mirBase accessionNone
Sequence
36- UGGCUCAGUCCAGCAGGGACAG -58
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