MirGeneDB 3.0

MirGeneDB ID

Loc-Mir-24-P1

Family name MIR-24 (all species)
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-24-P2  Loc-Mir-24-P3  Loc-Mir-24-P4 
Orthologues Dre-Mir-24-P1  Gmo-Mir-24-P1  Lch-Mir-24-P1  Pma-Mir-24-o1  Sto-Mir-24-P1  Tni-Mir-24-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LepOcu1)
LG10: 2473205-2473264 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-24-P1)
Novel-2 LG10: 2472995-2473051 [-] Ensembl
Mir-24-P1 LG10: 2473205-2473264 [-] Ensembl
Mir-27-P1 LG10: 2475632-2475694 [-] Ensembl
Mir-23-P1 LG10: 2478694-2478751 [-] Ensembl
Seed GGCUCAG
Precursor
(pre-Mir +30nt flank)
GAGGAAGCAAGCAAAUGGGCUCCAUCUCCAGUGCCUACUGAGCUGAUUACAGUUGAUUUAUUGAGCACUGGCUCAGUUCAGCAGGAACCGGAGUUCUGCCUCUUAAUACACGGAUCCCAA
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Structure
        10           20        30        40        50          
GAGGAAGCAAGCAAAUG---|  UCCAU    A  G   A         UUA    UGAUUU 
                    GGC     CUCC GU CCU CUGAGCUGA   CAGU      \
                    CCG     GAGG CA GGA GACUUGACU   GUCA      A
AACCCUAGGCACAUAAUUCU^  UCUU-    C  A   C         CG-    CGAGUU 
.       110       100         90        80         70
Deep sequencing
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CommentThere is a second Drosha cut +1 on both arms.
3' NTU No
MotifsNo
Tissue expression
- +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-24-P1_5p*

mirBase accessionNone
Sequence
0- GUGCCUACUGAGCUGAUUACAGU -23
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Mature sequence

Loc-Mir-24-P1_3p

mirBase accessionNone
Sequence
38- UGGCUCAGUUCAGCAGGAACCG -60
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