MirGeneDB 3.0

MirGeneDB ID

Sto-Mir-24-P1

Family name MIR-24 (all species)
Species Cloudy Catshark (Scyliorhinus torazame)
MiRBase ID
Paralogues Sto-Mir-24-P2  Sto-Mir-24-P3  Sto-Mir-24-P4 
Orthologues Dre-Mir-24-P1  Gmo-Mir-24-P1  Lch-Mir-24-P1  Loc-Mir-24-P1  Pma-Mir-24-o1  Tni-Mir-24-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_003427355_STO_add)
BFAA01002570.1: 216501-216561 [-]
Clustered miRNAs
(< 50kb from Mir-24-P1)
Mir-24-P1 BFAA01002570.1: 216501-216561 [-]
Mir-23-P1 BFAA01002570.1: 222579-222638 [-]
Seed GGCUCAG
Precursor
(pre-Mir +30nt flank)
GCUCUCAAGACAAGUUGGACUCUAUCUCCCGUGCCUACUGAGCUGAUUAGCAGUUGAUACCAGAAACACUGGCUCAGUUCAGCAGGAACAGGAGCUCAGUACCAUUUUCCACAGGGAACCA
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Structure
        10           20        30        40        50        60 
GCUCUCAAGACAAGUUGG---|  CUAU    C  G   A         UUAG    UGAUAC 
                     ACU    CUCC GU CCU CUGAGCUGA    CAGU      \
                     UGA    GAGG CA GGA GACUUGACU    GUCA      C
ACCAAGGGACACCUUUUACCA^  CUC-    A  A   C         CG--    CAAAGA 
 .       110       100         90        80          70
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Sto-Mir-24-P1_5p*

mirBase accessionNone
Sequence
0- GUGCCUACUGAGCUGAUUAGCAGU -24
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Mature sequence

Sto-Mir-24-P1_3p

mirBase accessionNone
Sequence
39- UGGCUCAGUUCAGCAGGAACAG -61
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